M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

ανά Messeguer Xavier, Treangen Todd J
Έκδοση 2006-10-01

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

ανά Treangen, Todd J, Messeguer, Xavier
Έκδοση 2006

You can't always sequence your way out of a tight spot: Next‐generation sequencing holds great promise for pathogen detection, but the devil is in the details

ανά Treangen, Todd J, Pop, Mihai
Τόπος έκδοσης EMBO Rep (2018)

Repetitive DNA and next-generation sequencing: computational challenges and solutions

ανά Treangen, Todd J., Salzberg, Steven L.
Έκδοση 2011

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

ανά Treangen, Todd J, Phillippy, Adam M
Έκδοση 2012

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

ανά Treangen, Todd J., Rocha, Eduardo P. C.
Έκδοση 2011

Bambus 2: scaffolding metagenomes

ανά Koren, Sergey, Treangen, Todd J., Pop, Mihai
Έκδοση 2011

Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome

ανά Treangen, Todd J., Wagner, Justin, Burns, Mark P., Villapol, Sonia
Τόπος έκδοσης Front Immunol (2018)

The impact of the neisserial DNA uptake sequences on genome evolution and stability

ανά Treangen, Todd J, Ambur, Ole Herman, Tonjum, Tone, Rocha, Eduardo PC
Έκδοση 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

ανά Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Τόπος έκδοσης Genome Biol (2014)

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers

ανά Davison, Michelle, Treangen, Todd J., Koren, Sergey, Pop, Mihai, Bhaya, Devaki
Τόπος έκδοσης PLoS One (2016)

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

ανά Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
Τόπος έκδοσης Genome Biol (2018)

Next Generation Sequence Assembly with AMOS

ανά Treangen, Todd J, Sommer, Dan D, Angly, Florent E, Koren, Sergey, Pop, Mihai
Έκδοση 2011

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

ανά Treangen, Todd J, Koren, Sergey, Astrovskaya, Irina, Sommer, Dan, Liu, Bo, Pop, Mihai
Έκδοση 2011

Automated ensemble assembly and validation of microbial genomes

ανά Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
Έκδοση 2014

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

ανά Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
Τόπος έκδοσης PLoS Negl Trop Dis (2016)

PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment

ανά Wang, Qi, Kille, Bryce, Liu, Tian Rui, Elworth, R. A. Leo, Treangen, Todd J.
Τόπος έκδοσης Nat Commun (2021)

Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets

ανά Kille, Bryce, Liu, Yunxi, Sapoval, Nicolae, Nute, Michael, Rauchwerger, Lawrence, Amato, Nancy, Treangen, Todd J.
Τόπος έκδοσης ArXiv (2021)

Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes

ανά Olson, Nathan D, Treangen, Todd J, Hill, Christopher M, Cepeda-Espinoza, Victoria, Ghurye, Jay, Koren, Sergey, Pop, Mihai
Τόπος έκδοσης Brief Bioinform (2017)

Mash: fast genome and metagenome distance estimation using MinHash

ανά Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Τόπος έκδοσης Genome Biol (2016)