M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

بواسطة Messeguer Xavier, Treangen Todd J
منشور في 2006-10-01

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

بواسطة Treangen, Todd J, Messeguer, Xavier
منشور في 2006

You can't always sequence your way out of a tight spot: Next‐generation sequencing holds great promise for pathogen detection, but the devil is in the details

بواسطة Treangen, Todd J, Pop, Mihai
الحاوية / القاعدة EMBO Rep (2018)

Repetitive DNA and next-generation sequencing: computational challenges and solutions

بواسطة Treangen, Todd J., Salzberg, Steven L.
منشور في 2011

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

بواسطة Treangen, Todd J, Phillippy, Adam M
منشور في 2012

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

بواسطة Treangen, Todd J., Rocha, Eduardo P. C.
منشور في 2011

Bambus 2: scaffolding metagenomes

بواسطة Koren, Sergey, Treangen, Todd J., Pop, Mihai
منشور في 2011

Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome

بواسطة Treangen, Todd J., Wagner, Justin, Burns, Mark P., Villapol, Sonia
الحاوية / القاعدة Front Immunol (2018)

The impact of the neisserial DNA uptake sequences on genome evolution and stability

بواسطة Treangen, Todd J, Ambur, Ole Herman, Tonjum, Tone, Rocha, Eduardo PC
منشور في 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

بواسطة Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
الحاوية / القاعدة Genome Biol (2014)

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers

بواسطة Davison, Michelle, Treangen, Todd J., Koren, Sergey, Pop, Mihai, Bhaya, Devaki
الحاوية / القاعدة PLoS One (2016)

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

بواسطة Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
الحاوية / القاعدة Genome Biol (2018)

Next Generation Sequence Assembly with AMOS

بواسطة Treangen, Todd J, Sommer, Dan D, Angly, Florent E, Koren, Sergey, Pop, Mihai
منشور في 2011

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

بواسطة Treangen, Todd J, Koren, Sergey, Astrovskaya, Irina, Sommer, Dan, Liu, Bo, Pop, Mihai
منشور في 2011

Automated ensemble assembly and validation of microbial genomes

بواسطة Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
منشور في 2014

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

بواسطة Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
الحاوية / القاعدة PLoS Negl Trop Dis (2016)

PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment

بواسطة Wang, Qi, Kille, Bryce, Liu, Tian Rui, Elworth, R. A. Leo, Treangen, Todd J.
الحاوية / القاعدة Nat Commun (2021)

Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets

بواسطة Kille, Bryce, Liu, Yunxi, Sapoval, Nicolae, Nute, Michael, Rauchwerger, Lawrence, Amato, Nancy, Treangen, Todd J.
الحاوية / القاعدة ArXiv (2021)

Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes

بواسطة Olson, Nathan D, Treangen, Todd J, Hill, Christopher M, Cepeda-Espinoza, Victoria, Ghurye, Jay, Koren, Sergey, Pop, Mihai
الحاوية / القاعدة Brief Bioinform (2017)

Mash: fast genome and metagenome distance estimation using MinHash

بواسطة Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
الحاوية / القاعدة Genome Biol (2016)