Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Tekijä Fontana, Paolo, Cestaro, Alessandro, Velasco, Riccardo, Formentin, Elide, Toppo, Stefano
Julkaistu 2009

Applications of Next-Generation Sequencing Technologies to Diagnostic Virology

Tekijä Barzon, Luisa, Lavezzo, Enrico, Militello, Valentina, Toppo, Stefano, Palù, Giorgio
Julkaistu 2011

A two-step strategy for constructing specifically self-subtracted cDNA libraries

Tekijä Laveder, Paolo, De Pittà, Cristiano, Toppo, Stefano, Valle, Giorgio, Lanfranchi, Gerolamo
Julkaistu 2002

Improving the quality of protein structure models by selecting from alignment alternatives

Tekijä Sommer, Ingolf, Toppo, Stefano, Sander, Oliver, Lengauer, Thomas, Tosatto, Silvio CE
Julkaistu 2006

Evolutionary Study of the Crassphage Virus at Gene Level

Tekijä Rossi, Alessandro, Treu, Laura, Toppo, Stefano, Zschach, Henrike, Campanaro, Stefano, Dutilh, Bas E.
Julkaisussa Viruses (2020)

Eliciting the Functional Taxonomy from protein annotations and taxa

Tekijä Falda, Marco, Lavezzo, Enrico, Fontana, Paolo, Bianco, Luca, Berselli, Michele, Formentin, Elide, Toppo, Stefano
Julkaisussa Sci Rep (2016)

Studying Interactions by Molecular Dynamics Simulations at High Concentration

Tekijä Fogolari, Federico, Corazza, Alessandra, Toppo, Stefano, Tosatto, Silvio C. E., Viglino, Paolo, Ursini, Fulvio, Esposito, Gennaro
Julkaistu 2012

Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms

Tekijä Bianco, Luca, Riccadonna, Samantha, Lavezzo, Enrico, Falda, Marco, Formentin, Elide, Cavalieri, Duccio, Toppo, Stefano, Fontana, Paolo
Julkaisussa Bioinformatics (2017)

Antimicrobial Treatment and Containment Measures for an Extremely Drug-Resistant Klebsiella pneumoniae ST101 Isolate Carrying pKPN101-IT, a Novel Fully Sequenced bla(KPC-2) Plasmid

Tekijä Frasson, Ilaria, Lavezzo, Enrico, Franchin, Elisa, Toppo, Stefano, Barzon, Luisa, Cavallaro, Antonietta, Richter, Sara N., Palù, Giorgio
Julkaistu 2012

Reducing bias in RNA sequencing data: a novel approach to compute counts

Tekijä Finotello, Francesca, Lavezzo, Enrico, Bianco, Luca, Barzon, Luisa, Mazzon, Paolo, Fontana, Paolo, Toppo, Stefano, Di Camillo, Barbara
Julkaistu 2014

Mapping and characterization of G-quadruplexes in Mycobacterium tuberculosis gene promoter regions

Tekijä Perrone, Rosalba, Lavezzo, Enrico, Riello, Erika, Manganelli, Riccardo, Palù, Giorgio, Toppo, Stefano, Provvedi, Roberta, Richter, Sara N.
Julkaisussa Sci Rep (2017)

Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs

Tekijä Borup, Rehannah HA, Toppo, Stefano, Chen, Yi-Wen, Teslovich, Tanya M, Lanfranchi, Gerolamo, Valle, Giorgio, Hoffman, Eric P
Julkaistu 2002

Full Genome Sequence-Based Comparative Study of Wild-Type and Vaccine Strains of Infectious Laryngotracheitis Virus from Italy

Tekijä Piccirillo, Alessandra, Lavezzo, Enrico, Niero, Giulia, Moreno, Ana, Massi, Paola, Franchin, Elisa, Toppo, Stefano, Salata, Cristiano, Palù, Giorgio
Julkaisussa PLoS One (2016)

G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide

Tekijä Lavezzo, Enrico, Berselli, Michele, Frasson, Ilaria, Perrone, Rosalba, Palù, Giorgio, Brazzale, Alessandra R., Richter, Sara N., Toppo, Stefano
Julkaisussa PLoS Comput Biol (2018)

Copper/Zinc Superoxide Dismutase from the Crocodile Icefish Chionodraco hamatus: Antioxidant Defense at Constant Sub-Zero Temperature

Tekijä Chatzidimitriou, Evangelia, Bisaccia, Paola, Corrà, Francesca, Bonato, Marco, Irato, Paola, Manuto, Laura, Toppo, Stefano, Bakiu, Rigers, Santovito, Gianfranco
Julkaisussa Antioxidants (Basel) (2020)

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

Tekijä Falda Marco, Toppo Stefano, Pescarolo Alessandro, Lavezzo Enrico, Di Camillo Barbara, Facchinetti Andrea, Cilia Elisa, Velasco Riccardo, Fontana Paolo
Julkaistu 2012-03-01

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

Tekijä Falda, Marco, Toppo, Stefano, Pescarolo, Alessandro, Lavezzo, Enrico, Di Camillo, Barbara, Facchinetti, Andrea, Cilia, Elisa, Velasco, Riccardo, Fontana, Paolo
Julkaistu 2012

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak

Tekijä Lavezzo, Enrico, Toppo, Stefano, Franchin, Elisa, Di Camillo, Barbara, Finotello, Francesca, Falda, Marco, Manganelli, Riccardo, Palù, Giorgio, Barzon, Luisa
Julkaisussa BMC Infect Dis (2013)

Identification of novel X-linked gain-of-function RPGR-ORF15 mutation in Italian family with retinitis pigmentosa and pathologic myopia

Tekijä Parmeggiani, Francesco, Barbaro, Vanessa, De Nadai, Katia, Lavezzo, Enrico, Toppo, Stefano, Chizzolini, Marzio, Palù, Giorgio, Parolin, Cristina, Di Iorio, Enzo
Julkaisussa Sci Rep (2016)

Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene

Tekijä Sambo, Francesco, Finotello, Francesca, Lavezzo, Enrico, Baruzzo, Giacomo, Masi, Giulia, Peta, Elektra, Falda, Marco, Toppo, Stefano, Barzon, Luisa, Di Camillo, Barbara
Julkaisussa BMC Bioinformatics (2018)