Design and analysis of ChIP-seq experiments for DNA-binding proteins

Por Kharchenko, Peter V., Tolstorukov, Michael Y., Park, Peter J.
Publicado em 2008

Analysis of primary structure of chromatin with next-generation sequencing

Por Tolstorukov, Michael Y., Kharchenko, Peter V., Park, Peter J.
Publicado em 2010

Organization of DNA in a bacterial nucleoid

Por Tolstorukov, Michael Y., Virnik, Konstantin, Zhurkin, Victor B., Adhya, Sankar
Publicado no BMC Microbiol (2016)

A-tract clusters may facilitate DNA packaging in bacterial nucleoid

Por Tolstorukov, Michael Y., Virnik, Konstantin M., Adhya, Sankar, Zhurkin, Victor B.
Publicado em 2005

Impact of chromatin structure on sequence variability in the human genome

Por Tolstorukov, Michael Y., Volfovsky, Natalia, Stephens, Robert M., Park, Peter J.
Publicado em 2011

nuScore: a web-interface for nucleosome positioning predictions

Por Tolstorukov, Michael Y., Choudhary, Vidhu, Olson, Wilma K., Zhurkin, Victor B., Park, Peter J.
Publicado em 2008

A Novel ‘Roll-and-Slide’ Mechanism of DNA Folding in Chromatin. Implications for Nucleosome Positioning

Por Tolstorukov, Michael Y., Colasanti, Andrew V., McCandlish, David, Olson, Wilma K., Zhurkin, Victor B.
Publicado em 2007

Nucleosome positioning in human HOX gene clusters

Por Kharchenko, Peter V., Woo, Caroline J., Tolstorukov, Michael Y., Kingston, Robert E., Park, Peter J.
Publicado em 2008

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

Por Tolstorukov, Michael Y., Kharchenko, Peter V., Goldman, Joseph A., Kingston, Robert E., Park, Peter J.
Publicado em 2009

Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cells

Por Tolstorukov, Michael Y., Goldman, Joseph A., Gilbert, Cristele, Ogryzko, Vasily, Kingston, Robert E., Park, Peter J.
Publicado em 2012

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction

Por Mueller, Britta, Mieczkowski, Jakub, Kundu, Sharmistha, Wang, Peggy, Sadreyev, Ruslan, Tolstorukov, Michael Y., Kingston, Robert E.
Publicado no Genes Dev (2017)

CpG Islands Recruit a Histone H3 Lysine 36 Demethylase

Por Blackledge, Neil P., Zhou, Jin C., Tolstorukov, Michael Y., Farcas, Anca M., Park, Peter J., Klose, Robert J.
Publicado em 2010

Enhancer regions show high histone H3.3 turnover that changes during differentiation

Por Deaton, Aimee M, Gómez-Rodríguez, Mariluz, Mieczkowski, Jakub, Tolstorukov, Michael Y, Kundu, Sharmistha, Sadreyev, Ruslan I, Jansen, Lars ET, Kingston, Robert E
Publicado no eLife (2016)

The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites

Por West, Jason A., Davis, Christopher P., Sunwoo, Hongjae, Simon, Matthew D., Sadreyev, Ruslan I., Wang, Peggy I., Tolstorukov, Michael Y., Kingston, Robert E.
Publicado no Mol Cell (2014)

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

Por West, Jason A., Cook, April, Alver, Burak H., Stadtfeld, Matthias, Deaton, Aimee M., Hochedlinger, Konrad, Park, Peter J., Tolstorukov, Michael Y., Kingston, Robert E.
Publicado em 2014

Resolving Heart Regeneration by Replacement Histone Profiling

Por Goldman, Joseph Aaron, Kuzu, Guray, Lee, Nutishia, Karasik, Jaclyn, Gemberling, Matthew, Foglia, Matthew J., Karra, Ravi, Dickson, Amy L., Sun, Fei, Tolstorukov, Michael Y., Poss, Kenneth D.
Publicado no Dev Cell (2017)

Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination

Por Pulivarthy, Sandhya R., Lion, Mattia, Kuzu, Guray, Matthews, Adam G. W., Borowsky, Mark L., Morris, John, Kingston, Robert E., Dennis, Jonathan H., Tolstorukov, Michael Y., Oettinger, Marjorie A.
Publicado no Proc Natl Acad Sci U S A (2016)

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

Por Mieczkowski, Jakub, Cook, April, Bowman, Sarah K., Mueller, Britta, Alver, Burak H., Kundu, Sharmistha, Deaton, Aimee M., Urban, Jennifer A., Larschan, Erica, Park, Peter J., Kingston, Robert E., Tolstorukov, Michael Y.
Publicado no Nat Commun (2016)

Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters

Por Tolstorukov, Michael Y., Sansam, Courtney G., Lu, Ping, Koellhoffer, Edward C., Helming, Katherine C., Alver, Burak H., Tillman, Erik J., Evans, Julia A., Wilson, Boris G., Park, Peter J., Roberts, Charles W. M.
Publicado em 2013

Histone locus regulation by the Drosophila dosage compensation adaptor protein CLAMP

Por Rieder, Leila E., Koreski, Kaitlin P., Boltz, Kara A., Kuzu, Guray, Urban, Jennifer A., Bowman, Sarah K., Zeidman, Anna, Jordan, William T., Tolstorukov, Michael Y., Marzluff, William F., Duronio, Robert J., Larschan, Erica N.
Publicado no Genes Dev (2017)