Mesoscale modeling of multi-protein-DNA assemblies: the role of the catabolic activator protein in Lac-repressor-mediated looping

Por Swigon, David, Olson, Wilma K.
Publicado em 2008

Slow-fast analysis of a multi-group asset flow model with implications for the dynamics of wealth

Por DeSantis, Mark, Swigon, David
Publicado no PLoS One (2018)

Relating Single-Molecule Measurements to Thermodynamics

Por Keller, David, Swigon, David, Bustamante, Carlos
Publicado em 2003

Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte-Carlo simulations

Por Czapla, Luke, Swigon, David, Olson, Wilma K.
Publicado em 2008

Modeling the Lac repressor-operator assembly: The influence of DNA looping on Lac repressor conformation

Por Swigon, David, Coleman, Bernard D., Olson, Wilma K.
Publicado em 2006

A Simple Mathematical Model of Signaling Resulting from the Binding of Lipopolysaccharide with Toll-like Receptor 4 Demonstrates Inherent Preconditioning Behavior

Por Rivière, Beatrice, Epshteyn, Yekaterina, Swigon, David, Vodovotz, Yoram
Publicado em 2008

Lac Repressor Mediated DNA Looping: Monte Carlo Simulation of Constrained DNA Molecules Complemented with Current Experimental Results

Por Biton, Yoav Y., Kumar, Sandip, Dunlap, David, Swigon, David
Publicado em 2014

Interplay of Protein and DNA Structure Revealed in Simulations of the lac Operon

Por Czapla, Luke, Grosner, Michael A., Swigon, David, Olson, Wilma K.
Publicado em 2013

Structural Insights into the Role of Architectural Proteins in DNA Looping Deduced from Computer Simulations

Por Olson, Wilma K., Grosner, Michael A., Czapla, Luke, Swigon, David
Publicado em 2013

A Three-Tiered Study of Differences in Murine Intrahost Immune Response to Multiple Pneumococcal Strains

Por Mochan-Keef, Ericka, Swigon, David, Ermentrout, G. Bard, Clermont, Gilles
Publicado no PLoS One (2015)

Mathematical Modeling of Energy Consumption in the Acute Inflammatory Response

Por Ramirez-Zuniga, Ivan, Rubin, Jonathan E., Swigon, David, Clermont, Gilles
Publicado no J Theor Biol (2018)

A mathematical model of intrahost pneumococcal pneumonia infection dynamics in murine strains

Por Mochan, Ericka, Swigon, David, Ermentrout, G. Bard, Lukens, Sarah, Clermont, Gilles
Publicado em 2014

Using a continuum model to predict closure time of gaps in intestinal epithelial cell layers

Por Arciero, Julia C., Mi, Qi, Branca, Maria, Hackam, David, Swigon, David
Publicado no Wound Repair Regen (2013)

DNA topology confers sequence specificity to nonspecific architectural proteins

Por Wei, Juan, Czapla, Luke, Grosner, Michael A., Swigon, David, Olson, Wilma K.
Publicado no Proc Natl Acad Sci U S A (2014)

Characterization of Blood Volume Space and Mitochondrial Activity in Functional Renal Cells *

Por McCarroll, Matthew J., Clermont, Gilles, Gomez, Hernando, Swigon, David, Parker, Robert S.
Publicado no IFAC Pap OnLine (2018)

Mathematics of DNA structure, function and interactions

Por Benham, Craig John., Harvey, Stephen., Olson, Wilma K., Sumners, De Witt., Swigon, David.
Publicado em 2009

One-Dimensional Elastic Continuum Model of Enterocyte Layer Migration

Por Mi, Qi, Swigon, David, Rivière, Béatrice, Cetin, Selma, Vodovotz, Yoram, Hackam, David J.
Publicado em 2007

Continuum Model of Collective Cell Migration in Wound Healing and Colony Expansion

Por Arciero, Julia C., Mi, Qi, Branca, Maria F., Hackam, David J., Swigon, David
Publicado em 2011

APT-MCMC, a C++/Python implementation of Markov Chain Monte Carlo for parameter identification

Por Zhang, Li Ang, Urbano, Alisa, Clermont, Gilles, Swigon, David, Banerjee, Ipsita, Parker, Robert S.
Publicado no Comput Chem Eng (2017)

A One-Nearest-Neighbor Approach to Identify the Original Time of Infection using Censored Baboon Sepsis Data

Por Zhang, Li Ang, Parker, Robert S., Swigon, David, Banerjee, Ipsita, Bahrami, Soheyl, Redl, Heinz, Clermont, Gilles
Publicado no Crit Care Med (2016)