Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR)

Autor Fukui, Kenji, Bessho, Yoshitaka, Shimada, Atsuhiro, Yokoyama, Shigeyuki, Kuramitsu, Seiki
Vydáno 2013

A novel single-stranded DNA-specific 3′–5′ exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways

Autor Shimada, Atsuhiro, Masui, Ryoji, Nakagawa, Noriko, Takahata, Yoshio, Kim, Kwang, Kuramitsu, Seiki, Fukui, Kenji
Vydáno 2010

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method

Autor Baba, Seiki, Shimada, Atsuhiro, Mizuno, Nobuhiro, Baba, Junpei, Ago, Hideo, Yamamoto, Masaki, Kumasaka, Takashi
Vydáno v J Appl Crystallogr (2019)

Structure of bovine cytochrome c oxidase crystallized at a neutral pH using a fluorinated detergent

Autor Luo, Fangjia, Shinzawa-Itoh, Kyoko, Hagimoto, Kaede, Shimada, Atsuhiro, Shimada, Satoru, Yamashita, Eiki, Yoshikawa, Shinya, Tsukihara, Tomitake
Vydáno v Acta Crystallogr F Struct Biol Commun (2017)

Structure of bovine cytochrome c oxidase in the ligand-free reduced state at neutral pH

Autor Luo, Fangjia, Shinzawa-Itoh, Kyoko, Hagimoto, Kaede, Shimada, Atsuhiro, Shimada, Satoru, Yamashita, Eiki, Yoshikawa, Shinya, Tsukihara, Tomitake
Vydáno v Acta Crystallogr F Struct Biol Commun (2018)

Development of a deep learning-based method to identify “good” regions of a cryo-electron microscopy grid

Autor Yokoyama, Yuichi, Terada, Tohru, Shimizu, Kentaro, Nishikawa, Kouki, Kozai, Daisuke, Shimada, Atsuhiro, Mizoguchi, Akira, Fujiyoshi, Yoshinori, Tani, Kazutoshi
Vydáno v Biophys Rev (2020)

X-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity

Autor Shimada, Atsuhiro, Hatano, Keita, Tadehara, Hitomi, Yano, Naomine, Shinzawa-Itoh, Kyoko, Yamashita, Eiki, Muramoto, Kazumasa, Tsukihara, Tomitake, Yoshikawa, Shinya
Vydáno v J Biol Chem (2018)

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays

Autor Ueno, Go, Shimada, Atsuhiro, Yamashita, Eiki, Hasegawa, Kazuya, Kumasaka, Takashi, Shinzawa-Itoh, Kyoko, Yoshikawa, Shinya, Tsukihara, Tomitake, Yamamoto, Masaki
Vydáno v J Synchrotron Radiat (2019)

Molecular Mechanisms of the Whole DNA Repair System: A Comparison of Bacterial and Eukaryotic Systems

Autor Morita, Rihito, Nakane, Shuhei, Shimada, Atsuhiro, Inoue, Masao, Iino, Hitoshi, Wakamatsu, Taisuke, Fukui, Kenji, Nakagawa, Noriko, Masui, Ryoji, Kuramitsu, Seiki
Vydáno 2010

Complex structure of cytochrome c–cytochrome c oxidase reveals a novel protein–protein interaction mode

Autor Shimada, Satoru, Shinzawa‐Itoh, Kyoko, Baba, Junpei, Aoe, Shimpei, Shimada, Atsuhiro, Yamashita, Eiki, Kang, Jiyoung, Tateno, Masaru, Yoshikawa, Shinya, Tsukihara, Tomitake
Vydáno v EMBO J (2016)

X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O(2) activation and unidirectional proton-pump mechanisms

Autor Shimada, Atsuhiro, Etoh, Yuki, Kitoh-Fujisawa, Rika, Sasaki, Ai, Shinzawa-Itoh, Kyoko, Hiromoto, Takeshi, Yamashita, Eiki, Muramoto, Kazumasa, Tsukihara, Tomitake, Yoshikawa, Shinya
Vydáno v J Biol Chem (2020)

The Mg(2+)-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle

Autor Yano, Naomine, Muramoto, Kazumasa, Shimada, Atsuhiro, Takemura, Shuhei, Baba, Junpei, Fujisawa, Hidenori, Mochizuki, Masao, Shinzawa-Itoh, Kyoko, Yamashita, Eiki, Tsukihara, Tomitake, Yoshikawa, Shinya
Vydáno v J Biol Chem (2016)

A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase

Autor Shimada, Atsuhiro, Kubo, Minoru, Baba, Seiki, Yamashita, Keitaro, Hirata, Kunio, Ueno, Go, Nomura, Takashi, Kimura, Tetsunari, Shinzawa-Itoh, Kyoko, Baba, Junpei, Hatano, Keita, Eto, Yuki, Miyamoto, Akari, Murakami, Hironori, Kumasaka, Takashi, Owada, Shigeki, Tono, Kensuke, Yabashi, Makina, Yamaguchi, Yoshihiro, Yanagisawa, Sachiko, Sakaguchi, Miyuki, Ogura, Takashi, Komiya, Ryo, Yan, Jiwang, Yamashita, Eiki, Yamamoto, Masaki, Ago, Hideo, Yoshikawa, Shinya, Tsukihara, Tomitake
Vydáno v Sci Adv (2017)