Thermostable Mismatch-Recognizing Protein MutS Suppresses Nonspecific Amplification during Polymerase Chain Reaction (PCR)

gan Fukui, Kenji, Bessho, Yoshitaka, Shimada, Atsuhiro, Yokoyama, Shigeyuki, Kuramitsu, Seiki
Cyhoeddwyd 2013

A novel single-stranded DNA-specific 3′–5′ exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways

gan Shimada, Atsuhiro, Masui, Ryoji, Nakagawa, Noriko, Takahata, Yoshio, Kim, Kwang, Kuramitsu, Seiki, Fukui, Kenji
Cyhoeddwyd 2010

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method

gan Baba, Seiki, Shimada, Atsuhiro, Mizuno, Nobuhiro, Baba, Junpei, Ago, Hideo, Yamamoto, Masaki, Kumasaka, Takashi
Cyhoeddwyd yn J Appl Crystallogr (2019)

Structure of bovine cytochrome c oxidase crystallized at a neutral pH using a fluorinated detergent

gan Luo, Fangjia, Shinzawa-Itoh, Kyoko, Hagimoto, Kaede, Shimada, Atsuhiro, Shimada, Satoru, Yamashita, Eiki, Yoshikawa, Shinya, Tsukihara, Tomitake
Cyhoeddwyd yn Acta Crystallogr F Struct Biol Commun (2017)

Structure of bovine cytochrome c oxidase in the ligand-free reduced state at neutral pH

gan Luo, Fangjia, Shinzawa-Itoh, Kyoko, Hagimoto, Kaede, Shimada, Atsuhiro, Shimada, Satoru, Yamashita, Eiki, Yoshikawa, Shinya, Tsukihara, Tomitake
Cyhoeddwyd yn Acta Crystallogr F Struct Biol Commun (2018)

Development of a deep learning-based method to identify “good” regions of a cryo-electron microscopy grid

gan Yokoyama, Yuichi, Terada, Tohru, Shimizu, Kentaro, Nishikawa, Kouki, Kozai, Daisuke, Shimada, Atsuhiro, Mizoguchi, Akira, Fujiyoshi, Yoshinori, Tani, Kazutoshi
Cyhoeddwyd yn Biophys Rev (2020)

X-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity

gan Shimada, Atsuhiro, Hatano, Keita, Tadehara, Hitomi, Yano, Naomine, Shinzawa-Itoh, Kyoko, Yamashita, Eiki, Muramoto, Kazumasa, Tsukihara, Tomitake, Yoshikawa, Shinya
Cyhoeddwyd yn J Biol Chem (2018)

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays

gan Ueno, Go, Shimada, Atsuhiro, Yamashita, Eiki, Hasegawa, Kazuya, Kumasaka, Takashi, Shinzawa-Itoh, Kyoko, Yoshikawa, Shinya, Tsukihara, Tomitake, Yamamoto, Masaki
Cyhoeddwyd yn J Synchrotron Radiat (2019)

Molecular Mechanisms of the Whole DNA Repair System: A Comparison of Bacterial and Eukaryotic Systems

gan Morita, Rihito, Nakane, Shuhei, Shimada, Atsuhiro, Inoue, Masao, Iino, Hitoshi, Wakamatsu, Taisuke, Fukui, Kenji, Nakagawa, Noriko, Masui, Ryoji, Kuramitsu, Seiki
Cyhoeddwyd 2010

Complex structure of cytochrome c–cytochrome c oxidase reveals a novel protein–protein interaction mode

gan Shimada, Satoru, Shinzawa‐Itoh, Kyoko, Baba, Junpei, Aoe, Shimpei, Shimada, Atsuhiro, Yamashita, Eiki, Kang, Jiyoung, Tateno, Masaru, Yoshikawa, Shinya, Tsukihara, Tomitake
Cyhoeddwyd yn EMBO J (2016)

X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O(2) activation and unidirectional proton-pump mechanisms

gan Shimada, Atsuhiro, Etoh, Yuki, Kitoh-Fujisawa, Rika, Sasaki, Ai, Shinzawa-Itoh, Kyoko, Hiromoto, Takeshi, Yamashita, Eiki, Muramoto, Kazumasa, Tsukihara, Tomitake, Yoshikawa, Shinya
Cyhoeddwyd yn J Biol Chem (2020)

The Mg(2+)-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle

gan Yano, Naomine, Muramoto, Kazumasa, Shimada, Atsuhiro, Takemura, Shuhei, Baba, Junpei, Fujisawa, Hidenori, Mochizuki, Masao, Shinzawa-Itoh, Kyoko, Yamashita, Eiki, Tsukihara, Tomitake, Yoshikawa, Shinya
Cyhoeddwyd yn J Biol Chem (2016)

A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase

gan Shimada, Atsuhiro, Kubo, Minoru, Baba, Seiki, Yamashita, Keitaro, Hirata, Kunio, Ueno, Go, Nomura, Takashi, Kimura, Tetsunari, Shinzawa-Itoh, Kyoko, Baba, Junpei, Hatano, Keita, Eto, Yuki, Miyamoto, Akari, Murakami, Hironori, Kumasaka, Takashi, Owada, Shigeki, Tono, Kensuke, Yabashi, Makina, Yamaguchi, Yoshihiro, Yanagisawa, Sachiko, Sakaguchi, Miyuki, Ogura, Takashi, Komiya, Ryo, Yan, Jiwang, Yamashita, Eiki, Yamamoto, Masaki, Ago, Hideo, Yoshikawa, Shinya, Tsukihara, Tomitake
Cyhoeddwyd yn Sci Adv (2017)