Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Por Shimizu Kentaro, Kadota Koji
Publicado em 2011-06-01

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Por Kadota, Koji, Shimizu, Kentaro
Publicado em 2011

Is the 77.1 % rate of in-hospital mortality in patients receiving venoarterial extracorporeal membrane oxygenation really that high?

Por Shimizu, Kentaro, Ogura, Hiroshi
Publicado no Crit Care (2016)

Evolutionary and Ecological Genomics of Arabidopsis

Por Shimizu, Kentaro K., Purugganan, Michael D.
Publicado em 2005

A weighted average difference method for detecting differentially expressed genes from microarray data

Por Kadota, Koji, Nakai, Yuji, Shimizu, Kentaro
Publicado em 2008

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Por Kadota, Koji, Nakai, Yuji, Shimizu, Kentaro
Publicado em 2009

Evaluation of Two Outlier-Detection-Based Methods for Detecting Tissue-Selective Genes from Microarray Data

Por Kadota, Koji, Konishi, Tomokazu, Shimizu, Kentaro
Publicado em 2007

A normalization strategy for comparing tag count data

Por Kadota, Koji, Nishiyama, Tomoaki, Shimizu, Kentaro
Publicado em 2012

Positional bias in variant calls against draft reference assemblies

Por Briskine, Roman V., Shimizu, Kentaro K.
Publicado no BMC Genomics (2017)

Mechanism of the Difference in the Binding Affinity of E. coli tRNA(Gln) to Glutaminyl-tRNA Synthetase Caused by Noninterface Nucleotides in Variable Loop

Por Yamasaki, Satoshi, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro
Publicado em 2007

BUDDY-system: A web site for constructing a dataset of protein pairs between ligand-bound and unbound states

Por Morita, Mizuki, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro
Publicado em 2011

Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

Por Shimizu, Kentaro K., Kudoh, Hiroshi, Kobayashi, Masaki J.
Publicado em 2011

TCC: an R package for comparing tag count data with robust normalization strategies

Por Sun, Jianqiang, Nishiyama, Tomoaki, Shimizu, Kentaro, Kadota, Koji
Publicado em 2013

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

Por Tang, Min, Sun, Jianqiang, Shimizu, Kentaro, Kadota, Koji
Publicado no BMC Bioinformatics (2015)

Rapid Heme Transfer Reactions between NEAr Transporter Domains of Staphylococcus aureus: A Theoretical Study Using QM/MM and MD Simulations

Por Moriwaki, Yoshitaka, Terada, Tohru, Tsumoto, Kouhei, Shimizu, Kentaro
Publicado no PLoS One (2015)

Development of a prediction system for tail-anchored proteins

Por Shigemitsu, Shunsuke, Cao, Wei, Terada, Tohru, Shimizu, Kentaro
Publicado no BMC Bioinformatics (2016)

MAA3 (MAGATAMA3) Helicase Gene is Required for Female Gametophyte Development and Pollen Tube Guidance in Arabidopsis thaliana

Por Shimizu, Kentaro K., Ito, Toshiro, Ishiguro, Sumie, Okada, Kiyotaka
Publicado em 2008

Coexistence of Trichome Variation in a Natural Plant Population: A Combined Study Using Ecological and Candidate Gene Approaches

Por Kawagoe, Tetsuhiro, Shimizu, Kentaro K., Kakutani, Tetsuji, Kudoh, Hiroshi
Publicado em 2011

Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center

Por Dawson, Wayne K., Jono, Ryota, Terada, Tohru, Shimizu, Kentaro
Publicado no PLoS One (2016)

ROKU: a novel method for identification of tissue-specific genes

Por Terada Tohru, Nakai Yuji, Ye Jiazhen, Kadota Koji, Shimizu Kentaro
Publicado em 2006-06-01