Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Tekijä Shimizu Kentaro, Kadota Koji
Julkaistu 2011-06-01

Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Tekijä Kadota, Koji, Shimizu, Kentaro
Julkaistu 2011

Is the 77.1 % rate of in-hospital mortality in patients receiving venoarterial extracorporeal membrane oxygenation really that high?

Tekijä Shimizu, Kentaro, Ogura, Hiroshi
Julkaisussa Crit Care (2016)

Commentary: A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines

Tekijä Kadota, Koji, Shimizu, Kentaro
Julkaisussa Front Genet (2020)

A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents

Tekijä Sun, Jianqiang, Shimizu-Inatsugi, Rie, Hofhuis, Hugo, Shimizu, Kentaro, Hay, Angela, Shimizu, Kentaro K., Sese, Jun
Julkaisussa Front Genet (2020)

Evolutionary and Ecological Genomics of Arabidopsis

Tekijä Shimizu, Kentaro K., Purugganan, Michael D.
Julkaistu 2005

A weighted average difference method for detecting differentially expressed genes from microarray data

Tekijä Kadota, Koji, Nakai, Yuji, Shimizu, Kentaro
Julkaistu 2008

Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Tekijä Kadota, Koji, Nakai, Yuji, Shimizu, Kentaro
Julkaistu 2009

Evaluation of Two Outlier-Detection-Based Methods for Detecting Tissue-Selective Genes from Microarray Data

Tekijä Kadota, Koji, Konishi, Tomokazu, Shimizu, Kentaro
Julkaistu 2007

A normalization strategy for comparing tag count data

Tekijä Kadota, Koji, Nishiyama, Tomoaki, Shimizu, Kentaro
Julkaistu 2012

Positional bias in variant calls against draft reference assemblies

Tekijä Briskine, Roman V., Shimizu, Kentaro K.
Julkaisussa BMC Genomics (2017)

Accurate Classification of Differential Expression Patterns in a Bayesian Framework With Robust Normalization for Multi-Group RNA-Seq Count Data

Tekijä Osabe, Takayuki, Shimizu, Kentaro, Kadota, Koji
Julkaisussa Bioinform Biol Insights (2019)

Gut Microbiota and Probiotics/Synbiotics for Modulation of Immunity in Critically Ill Patients

Tekijä Shimizu, Kentaro, Ojima, Masahiro, Ogura, Hiroshi
Julkaisussa Nutrients (2021)

Reference-guided de novo assembly approach improves genome reconstruction for related species

Tekijä Lischer, Heidi E. L., Shimizu, Kentaro K.
Julkaisussa BMC Bioinformatics (2017)

Mechanism of the Difference in the Binding Affinity of E. coli tRNA(Gln) to Glutaminyl-tRNA Synthetase Caused by Noninterface Nucleotides in Variable Loop

Tekijä Yamasaki, Satoshi, Nakamura, Shugo, Terada, Tohru, Shimizu, Kentaro
Julkaistu 2007

BUDDY-system: A web site for constructing a dataset of protein pairs between ligand-bound and unbound states

Tekijä Morita, Mizuki, Terada, Tohru, Nakamura, Shugo, Shimizu, Kentaro
Julkaistu 2011

Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

Tekijä Shimizu, Kentaro K., Kudoh, Hiroshi, Kobayashi, Masaki J.
Julkaistu 2011

TCC: an R package for comparing tag count data with robust normalization strategies

Tekijä Sun, Jianqiang, Nishiyama, Tomoaki, Shimizu, Kentaro, Kadota, Koji
Julkaistu 2013

Evaluation of methods for differential expression analysis on multi-group RNA-seq count data

Tekijä Tang, Min, Sun, Jianqiang, Shimizu, Kentaro, Kadota, Koji
Julkaisussa BMC Bioinformatics (2015)

Rapid Heme Transfer Reactions between NEAr Transporter Domains of Staphylococcus aureus: A Theoretical Study Using QM/MM and MD Simulations

Tekijä Moriwaki, Yoshitaka, Terada, Tohru, Tsumoto, Kouhei, Shimizu, Kentaro
Julkaisussa PLoS One (2015)