S4: structure-based sequence alignments of SCOP superfamilies

Por Casbon, James, Saqi, Mansoor A. S.
Publicado em 2005

Analysis of superfamily specific profile-profile recognition accuracy

Por Casbon, James A, Saqi, Mansoor AS
Publicado em 2004

On single and multiple models of protein families for the detection of remote sequence relationships

Por Casbon, James A, Saqi, Mansoor AS
Publicado em 2006

A high level interface to SCOP and ASTRAL implemented in Python

Por Casbon, James A, Crooks, Gavin E, Saqi, Mansoor AS
Publicado em 2006

Spectral clustering of protein sequences

Por Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.
Publicado em 2006

Predicting deleterious nsSNPs: an analysis of sequence and structural attributes

Por Saqi Mansoor AS, Caulfield Mark J, Munroe Patricia B, Dobson Richard J
Publicado em 2006-04-01

Predicting deleterious nsSNPs: an analysis of sequence and structural attributes

Por Dobson, Richard J, Munroe, Patricia B, Caulfield, Mark J, Saqi, Mansoor AS
Publicado em 2006

Discovering Study-Specific Gene Regulatory Networks

Por Bo, Valeria, Curtis, Tanya, Lysenko, Artem, Saqi, Mansoor, Swift, Stephen, Tucker, Allan
Publicado em 2014

An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching

Por Saqi Mansoor, Dobson Richard Jb., Kraben Preben, Hodgson David A., Wild David L.
Publicado em 2009-03-01

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks

Por Balaur, Irina, Mazein, Alexander, Saqi, Mansoor, Lysenko, Artem, Rawlings, Christopher J, Auffray, Charles
Publicado no Bioinformatics (2017)

Representing and querying disease networks using graph databases

Por Lysenko, Artem, Roznovăţ, Irina A., Saqi, Mansoor, Mazein, Alexander, Rawlings, Christopher J, Auffray, Charles
Publicado no BioData Min (2016)

STON: exploring biological pathways using the SBGN standard and graph databases

Por Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Publicado no BMC Bioinformatics (2016)

Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles

Por Waite, Richard D, Paccanaro, Alberto, Papakonstantinopoulou, Anastasia, Hurst, Jacob M, Saqi, Mansoor, Littler, Eddie, Curtis, Michael A
Publicado em 2006

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

Por Lysenko, Artem, Defoin-Platel, Michael, Hassani-Pak, Keywan, Taubert, Jan, Hodgman, Charlie, Rawlings, Christopher J, Saqi, Mansoor
Publicado em 2011

AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations

Por Defoin-Platel, Michael, Hindle, Matthew M, Lysenko, Artem, Powers, Stephen J, Habash, Dimah Z, Rawlings, Christopher J, Saqi, Mansoor
Publicado em 2011

Network-Based Data Integration for Selecting Candidate Virulence Associated Proteins in the Cereal Infecting Fungus Fusarium graminearum

Por Lysenko, Artem, Urban, Martin, Bennett, Laura, Tsoka, Sophia, Janowska-Sejda, Elzbieta, Rawlings, Chris J., Hammond-Kosack, Kim E., Saqi, Mansoor
Publicado em 2013

Systems Responses to Progressive Water Stress in Durum Wheat

Por Habash, Dimah Z., Baudo, Marcela, Hindle, Matthew, Powers, Stephen J., Defoin-Platel, Michael, Mitchell, Rowan, Saqi, Mansoor, Rawlings, Chris, Latiri, Kawther, Araus, Jose L., Abdulkader, Ahmad, Tuberosa, Roberto, Lawlor, David W., Nachit, Miloudi M.
Publicado em 2014

Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Ch...

Por Rudd, Jason J., Kanyuka, Kostya, Hassani-Pak, Keywan, Derbyshire, Mark, Andongabo, Ambrose, Devonshire, Jean, Lysenko, Artem, Saqi, Mansoor, Desai, Nalini M., Powers, Stephen J., Hooper, Juliet, Ambroso, Linda, Bharti, Arvind, Farmer, Andrew, Hammond-Kosack, Kim E., Dietrich, Robert A., Courbot, Mikael
Publicado no Plant Physiol (2015)

Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms

Por Mazein, Alexander, Ostaszewski, Marek, Kuperstein, Inna, Watterson, Steven, Le Novère, Nicolas, Lefaudeux, Diane, De Meulder, Bertrand, Pellet, Johann, Balaur, Irina, Saqi, Mansoor, Nogueira, Maria Manuela, He, Feng, Parton, Andrew, Lemonnier, Nathanaël, Gawron, Piotr, Gebel, Stephan, Hainaut, Pierre, Ollert, Markus, Dogrusoz, Ugur, Barillot, Emmanuel, Zinovyev, Andrei, Schneider, Reinhard, Balling, Rudi, Auffray, Charles
Publicado no NPJ Syst Biol Appl (2018)

A computational framework for complex disease stratification from multiple large-scale datasets

Por De Meulder, Bertrand, Lefaudeux, Diane, Bansal, Aruna T., Mazein, Alexander, Chaiboonchoe, Amphun, Ahmed, Hassan, Balaur, Irina, Saqi, Mansoor, Pellet, Johann, Ballereau, Stéphane, Lemonnier, Nathanaël, Sun, Kai, Pandis, Ioannis, Yang, Xian, Batuwitage, Manohara, Kretsos, Kosmas, van Eyll, Jonathan, Bedding, Alun, Davison, Timothy, Dodson, Paul, Larminie, Christopher, Postle, Anthony, Corfield, Julie, Djukanovic, Ratko, Chung, Kian Fan, Adcock, Ian M., Guo, Yi-Ke, Sterk, Peter J., Manta, Alexander, Rowe, Anthony, Baribaud, Frédéric, Auffray, Charles
Publicado no BMC Syst Biol (2018)