g<monospace>raphite</monospace> - a Bioconductor package to convert pathway topology to gene network

Por Sales Gabriele, Calura Enrica, Cavalieri Duccio, Romualdi Chiara
Publicado em 2012-01-01

graphite - a Bioconductor package to convert pathway topology to gene network

Por Sales, Gabriele, Calura, Enrica, Cavalieri, Duccio, Romualdi, Chiara
Publicado em 2012

Graphite Web: web tool for gene set analysis exploiting pathway topology

Por Sales, Gabriele, Calura, Enrica, Martini, Paolo, Romualdi, Chiara
Publicado em 2013

Impact of probe annotation on the integration of miRNA–mRNA expression profiles for miRNA target detection

Por Sales, Gabriele, Coppe, Alessandro, Bicciato, Silvio, Bortoluzzi, Stefania, Romualdi, Chiara
Publicado em 2010

MAGIA(2): from miRNA and genes expression data integrative analysis to microRNA–transcription factor mixed regulatory circuits (2012 update)

Por Bisognin, Andrea, Sales, Gabriele, Coppe, Alessandro, Bortoluzzi, Stefania, Romualdi, Chiara
Publicado em 2012

Along signal paths: an empirical gene set approach exploiting pathway topology

Por Martini, Paolo, Sales, Gabriele, Massa, M. Sofia, Chiogna, Monica, Romualdi, Chiara
Publicado em 2013

MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

Por Sales, Gabriele, Coppe, Alessandro, Bisognin, Andrea, Biasiolo, Marta, Bortoluzzi, Stefania, Romualdi, Chiara
Publicado em 2010

Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies

Por Martini, Paolo, Risso, Davide, Sales, Gabriele, Romualdi, Chiara, Lanfranchi, Gerolamo, Cagnin, Stefano
Publicado em 2011

timeClip: pathway analysis for time course data without replicates

Por Martini, Paolo, Sales, Gabriele, Calura, Enrica, Cagnin, Stefano, Chiogna, Monica, Romualdi, Chiara
Publicado em 2014

Systems Biology Approach to the Dissection of the Complexity of Regulatory Networks in the S. scrofa Cardiocirculatory System

Por Martini, Paolo, Sales, Gabriele, Calura, Enrica, Brugiolo, Mattia, Lanfranchi, Gerolamo, Romualdi, Chiara, Cagnin, Stefano
Publicado em 2013

Analysis of miRNA and mRNA Expression Profiles Highlights Alterations in Ionizing Radiation Response of Human Lymphocytes under Modeled Microgravity

Por Girardi, Cristina, De Pittà, Cristiano, Casara, Silvia, Sales, Gabriele, Lanfranchi, Gerolamo, Celotti, Lucia, Mognato, Maddalena
Publicado em 2012

Impact of different dosage of protamine on heparin reversal during off-pump coronary artery bypass: a clinical study

Por Suelzu, Salvatore, Cossu, Andrea, Pala, Giovanni, Portoghese, Michele, Columbanu, Valeria, Sales, Gabriele, Solinas, Luigi, Brazzi, Luca
Publicado no Heart Lung Vessel (2015)

Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles

Por Calura, Enrica, Martini, Paolo, Sales, Gabriele, Beltrame, Luca, Chiorino, Giovanna, D’Incalci, Maurizio, Marchini, Sergio, Romualdi, Chiara
Publicado em 2014

The Antarctic Krill Euphausia superba Shows Diurnal Cycles of Transcription under Natural Conditions

Por De Pittà, Cristiano, Biscontin, Alberto, Albiero, Alessandro, Sales, Gabriele, Millino, Caterina, Mazzotta, Gabriella M., Bertolucci, Cristiano, Costa, Rodolfo
Publicado em 2013

Impact of Host Genes and Strand Selection on miRNA and miRNA* Expression

Por Biasiolo, Marta, Sales, Gabriele, Lionetti, Marta, Agnelli, Luca, Todoerti, Katia, Bisognin, Andrea, Coppe, Alessandro, Romualdi, Chiara, Neri, Antonino, Bortoluzzi, Stefania
Publicado em 2011

KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)

Por Sales, Gabriele, Deagle, Bruce E., Calura, Enrica, Martini, Paolo, Biscontin, Alberto, De Pittà, Cristiano, Kawaguchi, So, Romualdi, Chiara, Meyer, Bettina, Costa, Rodolfo, Jarman, Simon
Publicado no PLoS One (2017)

Tissue-Specific Expression and Regulatory Networks of Pig MicroRNAome

Por Martini, Paolo, Sales, Gabriele, Brugiolo, Mattia, Gandaglia, Alessandro, Naso, Filippo, De Pittà, Cristiano, Spina, Michele, Gerosa, Gino, Chemello, Francesco, Romualdi, Chiara, Cagnin, Stefano, Lanfranchi, Gerolamo
Publicado em 2014

Disentangling the microRNA regulatory milieu in multiple myeloma: integrative genomics analysis outlines mixed miRNA-TF circuits and pathway-derived networks modulated in t(4;14) p...

Por Calura, Enrica, Bisognin, Andrea, Manzoni, Martina, Todoerti, Katia, Taiana, Elisa, Sales, Gabriele, Morgan, Gareth J., Tonon, Giovanni, Amodio, Nicola, Tassone, Pierfrancesco, Neri, Antonino, Agnelli, Luca, Romualdi, Chiara, Bortoluzzi, Stefania
Publicado no Oncotarget (2015)