An analytical pipeline for genomic representations used for cytosine methylation studies

Por Thompson, Reid F., Reimers, Mark, Khulan, Batbayar, Gissot, Mathieu, Richmond, Todd A., Chen, Quan, Zheng, Xin, Kim, Kami, Greally, John M.
Publicado no Bioinformatics (2008)

A high-resolution map of active promoters in the human genome

Por Kim, Tae Hoon, Barrera, Leah O., Zheng, Ming, Qu, Chunxu, Singer, Michael A., Richmond, Todd A., Wu, Yingnian, Green, Roland D., Ren, Bing
Publicado em 2005

Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization

Por Maydan, Jason S., Flibotte, Stephane, Edgley, Mark L., Lau, Joanne, Selzer, Rebecca R., Richmond, Todd A., Pofahl, Nathan J., Thomas, James H., Moerman, Donald G.
Publicado em 2007

wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data

Por Cahan, Patrick, Godfrey, Laura E., Eis, Peggy S., Richmond, Todd A., Selzer, Rebecca R., Brent, Michael, McLeod, Howard L., Ley, Timothy J., Graubert, Timothy A.
Publicado em 2008

Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays

Por Wong, Christopher W., Albert, Thomas J., Vega, Vinsensius B., Norton, Jason E., Cutler, David J., Richmond, Todd A., Stanton, Lawrence W., Liu, Edison T., Miller, Lance D.
Publicado em 2004

Proteome-wide Epitope Mapping of Antibodies Using Ultra-dense Peptide Arrays

Por Forsström, Björn, Axnäs, Barbara Bisławska, Stengele, Klaus-Peter, Bühler, Jochen, Albert, Thomas J., Richmond, Todd A., Hu, Francis Jingxin, Nilsson, Peter, Hudson, Elton P., Rockberg, Johan, Uhlen, Mathias
Publicado em 2014

A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse Genome

Por Graubert, Timothy A, Cahan, Patrick, Edwin, Deepa, Selzer, Rebecca R, Richmond, Todd A, Eis, Peggy S, Shannon, William D, Li, Xia, McLeod, Howard L, Cheverud, James M, Ley, Timothy J
Publicado em 2007

Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements

Por Dostie, Josée, Richmond, Todd A., Arnaout, Ramy A., Selzer, Rebecca R., Lee, William L., Honan, Tracey A., Rubio, Eric D., Krumm, Anton, Lamb, Justin, Nusbaum, Chad, Green, Roland D., Dekker, Job
Publicado em 2006

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

Por Evans, Joseph, Kim, Jeongwoon, Childs, Kevin L, Vaillancourt, Brieanne, Crisovan, Emily, Nandety, Aruna, Gerhardt, Daniel J, Richmond, Todd A, Jeddeloh, Jeffrey A, Kaeppler, Shawn M, Casler, Michael D, Buell, C Robin
Publicado no Plant J (2014)

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays

Por Matějková, Petra, Strouhal, Michal, Šmajs, David, Norris, Steven J, Palzkill, Timothy, Petrosino, Joseph F, Sodergren, Erica, Norton, Jason E, Singh, Jaz, Richmond, Todd A, Molla, Michael N, Albert, Thomas J, Weinstock, George M
Publicado em 2008

Whole exome capture in solution with 3 Gbp of data

Por Bainbridge, Matthew N, Wang, Min, Burgess, Daniel L, Kovar, Christie, Rodesch, Matthew J, D'Ascenzo, Mark, Kitzman, Jacob, Wu, Yuan-Qing, Newsham, Irene, Richmond, Todd A, Jeddeloh, Jeffrey A, Muzny, Donna, Albert, Thomas J, Gibbs, Richard A
Publicado em 2010

Comparative isoschizomer profiling of cytosine methylation: The HELP assay

Por Khulan, Batbayar, Thompson, Reid F., Ye, Kenny, Fazzari, Melissa J., Suzuki, Masako, Stasiek, Edyta, Figueroa, Maria E., Glass, Jacob L., Chen, Quan, Montagna, Cristina, Hatchwell, Eli, Selzer, Rebecca R., Richmond, Todd A., Green, Roland D., Melnick, Ari, Greally, John M.
Publicado em 2006

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

Por Muñoz-Amatriaín, María, Eichten, Steven R, Wicker, Thomas, Richmond, Todd A, Mascher, Martin, Steuernagel, Burkhard, Scholz, Uwe, Ariyadasa, Ruvini, Spannagl, Manuel, Nussbaumer, Thomas, Mayer, Klaus FX, Taudien, Stefan, Platzer, Matthias, Jeddeloh, Jeffrey A, Springer, Nathan M, Muehlbauer, Gary J, Stein, Nils
Publicado em 2013

High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers

Por Oda, Mayumi, Glass, Jacob L., Thompson, Reid F., Mo, Yongkai, Olivier, Emmanuel N., Figueroa, Maria E., Selzer, Rebecca R., Richmond, Todd A., Zhang, Xinmin, Dannenberg, Luke, Green, Roland D., Melnick, Ari, Hatchwell, Eli, Bouhassira, Eric E., Verma, Amit, Suzuki, Masako, Greally, John M.
Publicado em 2009

Somatic retrotransposition alters the genetic landscape of the human brain

Por Baillie, J. Kenneth, Barnett, Mark W., Upton, Kyle R., Gerhardt, Daniel J., Richmond, Todd A., De Sapio, Fioravante, Brennan, Paul, Rizzu, Patrizia, Smith, Sarah, Fell, Mark, Talbot, Richard T., Gustincich, Stefano, Freeman, Thomas C., Mattick, John S., Hume, David A., Heutink, Peter, Carninci, Piero, Jeddeloh, Jeffrey A., Faulkner, Geoffrey J.
Publicado em 2011

Genetic Perturbation of the Maize Methylome

Por Li, Qing, Eichten, Steven R., Hermanson, Peter J., Zaunbrecher, Virginia M., Song, Jawon, Wendt, Jennifer, Rosenbaum, Heidi, Madzima, Thelma F., Sloan, Amy E., Huang, Ji, Burgess, Daniel L., Richmond, Todd A., McGinnis, Karen M., Meeley, Robert B., Danilevskaya, Olga N., Vaughn, Matthew W., Kaeppler, Shawn M., Jeddeloh, Jeffrey A., Springer, Nathan M.
Publicado no Plant Cell (2014)

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

Por Mascher, Martin, Richmond, Todd A, Gerhardt, Daniel J, Himmelbach, Axel, Clissold, Leah, Sampath, Dharanya, Ayling, Sarah, Steuernagel, Burkhard, Pfeifer, Matthias, D'Ascenzo, Mark, Akhunov, Eduard D, Hedley, Pete E, Gonzales, Ana M, Morrell, Peter L, Kilian, Benjamin, Blattner, Frank R, Scholz, Uwe, Mayer, Klaus FX, Flavell, Andrew J, Muehlbauer, Gary J, Waugh, Robbie, Jeddeloh, Jeffrey A, Stein, Nils
Publicado no Plant J (2013)

Acquired copy number alterations in adult acute myeloid leukemia genomes

Por Walter, Matthew J., Payton, Jacqueline E., Ries, Rhonda E., Shannon, William D., Deshmukh, Hrishikesh, Zhao, Yu, Baty, Jack, Heath, Sharon, Westervelt, Peter, Watson, Mark A., Tomasson, Michael H., Nagarajan, Rakesh, O'Gara, Brian P., Bloomfield, Clara D., Mrózek, Krzysztof, Selzer, Rebecca R., Richmond, Todd A., Kitzman, Jacob, Geoghegan, Joel, Eis, Peggy S., Maupin, Rachel, Fulton, Robert S., McLellan, Michael, Wilson, Richard K., Mardis, Elaine R., Link, Daniel C., Graubert, Timothy A., DiPersio, John F., Ley, Timothy J.
Publicado em 2009