Chapter 6: Structural Variation and Medical Genomics

por Raphael, Benjamin J.
Publicado em 2012

Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data

por Raphael, Benjamin J., Vandin, Fabio
Publicado no J Comput Biol (2015)

Identification of hierarchical chromatin domains

por Weinreb, Caleb, Raphael, Benjamin J.
Publicado no Bioinformatics (2016)

Tumor phylogeny inference using tree-constrained importance sampling

por Satas, Gryte, Raphael, Benjamin J
Publicado no Bioinformatics (2017)

Haplotype phasing in single-cell DNA-sequencing data

por Satas, Gryte, Raphael, Benjamin J
Publicado no Bioinformatics (2018)

Copy number evolution with weighted aberrations in cancer

por Zeira, Ron, Raphael, Benjamin J
Publicado no Bioinformatics (2020)

Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data

por Zaccaria, Simone, Raphael, Benjamin J.
Publicado no Nat Commun (2020)

Reconstruction of clone- and haplotype-specific cancer genome karyotypes from bulk tumor samples

por Aganezov, Sergey, Raphael, Benjamin J.
Publicado no Genome Res (2020)

Algorithms in bioinformatics 12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings /

por WABI (Workshop), Raphael, Benjamin J., Tang, Jijun.
Publicado em 2012

De novo discovery of mutated driver pathways in cancer

por Vandin, Fabio, Upfal, Eli, Raphael, Benjamin J.
Publicado em 2012

Finding driver pathways in cancer: models and algorithms

por Vandin, Fabio, Upfal, Eli, Raphael, Benjamin J
Publicado em 2012

THetA: inferring intra-tumor heterogeneity from high-throughput DNA sequencing data

por Oesper, Layla, Mahmoody, Ahmad, Raphael, Benjamin J
Publicado em 2013

A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data

por Hajirasouliha, Iman, Mahmoody, Ahmad, Raphael, Benjamin J.
Publicado em 2014

Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes

por Weinreb, Caleb, Oesper, Layla, Raphael, Benjamin J
Publicado no BMC Genomics (2014)

Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data

por Oesper, Layla, Satas, Gryte, Raphael, Benjamin J.
Publicado no Bioinformatics (2014)

On the Sample Complexity of Cancer Pathways Identification

por Vandin, Fabio, Raphael, Benjamin J., Upfal, Eli
Publicado no J Comput Biol (2016)

Gene and Network Analysis of Common Variants Reveals Novel Associations in Multiple Complex Diseases

por Nakka, Priyanka, Raphael, Benjamin J., Ramachandran, Sohini
Publicado no Genetics (2016)

Identifying simultaneous rearrangements in cancer genomes

por Oesper, Layla, Dantas, Simone, Raphael, Benjamin J
Publicado no Bioinformatics (2018)

Classical function theory, operator dilation theory, and machine computation on multiply-connected domains /

por Agler, Jim, Harland, John, Raphael, Benjamin J.
Publicado em 2008.

AliWABA: alignment on the web through an A-Bruijn approach

por Jones, Neil C., Zhi, Degui, Raphael, Benjamin J.
Publicado em 2006