Ultra-Long Read Nanopore Sequencing Methods for Metagenomics

由 Quick, Josh
發表在 J Biomol Tech (2019)

Nanopore sequencing and assembly of a human genome with ultra-long reads

由 Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
發表在 Nat Biotechnol (2018)

The hospital microbiome project: meeting report for the UK science and innovation network UK-USA workshop ‘beating the superbugs: hospital microbiome studies for tackling antimicro...

由 Westwood, Jack, Burnett, Matthew, Spratt, David, Ball, Michael, Wilson, Daniel J, Wellsteed, Sally, Cleary, David, Green, Andy, Hutley, Emma, Cichowska, Anna, Hopkins, Susan, Wilcox, Mark, Kessel, Anthony, Zoubiane, Ghada, Bethke, Lara, Crook, Derrick W, Walker, Jimmy, Sutton, Mark, Marsh, Philip, Moore, Ginny, Wilson, Peter, Holmes, Alison, Hoffman, Peter, Smith, Chris, Oppenheim, Beryl, Parkhill, Julian, Woodford, Neil, Robotham, Julie, Kidgell, Claire, Anyim, Martin, Gilkes, Gabriella, Field, Dawn, Quick, Josh, Pickering, Tony, Kirkup, Benjamin C, Gilbert, Jack
發表在 Stand Genomic Sci (2014)

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

由 Quick, Josh, Grubaugh, Nathan D, Pullan, Steven T, Claro, Ingra M, Smith, Andrew D, Gangavarapu, Karthik, Oliveira, Glenn, Robles-Sikisaka, Refugio, Rogers, Thomas F, Beutler, Nathan A, Burton, Dennis R, Lewis-Ximenez, Lia Laura, de Jesus, Jaqueline Goes, Giovanetti, Marta, Hill, Sarah, Black, Allison, Bedford, Trevor, Carroll, Miles W, Nunes, Marcio, Alcantara, Luiz Carlos, Sabino, Ester C, Baylis, Sally A, Faria, Nuno, Loose, Matthew, Simpson, Jared T, Pybus, Oliver G, Andersen, Kristian G, Loman, Nicholas J
發表在 Nat Protoc (2017)

Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China

由 Lu, Jing, du Plessis, Louis, Liu, Zhe, Hill, Verity, Kang, Min, Lin, Huifang, Sun, Jiufeng, François, Sarah, Kraemer, Moritz U.G., Faria, Nuno R., McCrone, John T., Peng, Jinju, Xiong, Qianling, Yuan, Runyu, Zeng, Lilian, Zhou, Pingping, Liang, Chumin, Yi, Lina, Liu, Jun, Xiao, Jianpeng, Hu, Jianxiong, Liu, Tao, Ma, Wenjun, Li, Wei, Su, Juan, Zheng, Huanying, Peng, Bo, Fang, Shisong, Su, Wenzhe, Li, Kuibiao, Sun, Ruilin, Bai, Ru, Tang, Xi, Liang, Minfeng, Quick, Josh, Song, Tie, Rambaut, Andrew, Loman, Nick, Raghwani, Jayna, Pybus, Oliver G., Ke, Changwen
發表在 Cell (2020)

Treatment of COVID-19 with remdesivir in the absence of humoral immunity: a case report

由 Buckland, Matthew S., Galloway, James B., Fhogartaigh, Caoimhe Nic, Meredith, Luke, Provine, Nicholas M., Bloor, Stuart, Ogbe, Ane, Zelek, Wioleta M., Smielewska, Anna, Yakovleva, Anna, Mann, Tiffeney, Bergamaschi, Laura, Turner, Lorinda, Mescia, Frederica, Toonen, Erik J. M., Hackstein, Carl-Philipp, Akther, Hossain Delowar, Vieira, Vinicius Adriano, Ceron-Gutierrez, Lourdes, Periselneris, Jimstan, Kiani-Alikhan, Sorena, Grigoriadou, Sofia, Vaghela, Devan, Lear, Sara E., Török, M. Estée, Hamilton, William L., Stockton, Joanne, Quick, Josh, Nelson, Peter, Hunter, Michael, Coulter, Tanya I., Devlin, Lisa, Bradley, John R., Smith, Kenneth G. C., Ouwehand, Willem H., Estcourt, Lise, Harvala, Heli, Roberts, David J., Wilkinson, Ian B., Screaton, Nick, Loman, Nicholas, Doffinger, Rainer, Lyons, Paul A., Morgan, B. Paul, Goodfellow, Ian G., Klenerman, Paul, Lehner, Paul J., Matheson, Nicholas J., Thaventhiran, James E. D.
發表在 Nat Commun (2020)

Telomere-to-telomere assembly of a complete human X chromosome

由 Miga, Karen H., Koren, Sergey, Rhie, Arang, Vollger, Mitchell R., Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A., Schneider, Valerie A., Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G., Chang, Alexander M., Hansen, Nancy F., Wilfert, Amy B., Thibaud-Nissen, Françoise, Schmitt, Anthony D., Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y., Soto, Daniela C., Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J., Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa ana, Graves Lindsay, Tina A., Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C., Pevzner, Pavel A., Gerton, Jennifer L., Sullivan, Beth A., Eichler, Evan E., Phillippy, Adam M.
發表在 Nature (2020)

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon

由 Naveca, Felipe Gomes, Claro, Ingra, Giovanetti, Marta, de Jesus, Jaqueline Goes, Xavier, Joilson, Iani, Felipe Campos de Melo, do Nascimento, Valdinete Alves, de Souza, Victor Costa, Silveira, Paola Paz, Lourenço, José, Santillana, Mauricio, Kraemer, Moritz U. G., Quick, Josh, Hill, Sarah C., Thézé, Julien, Carvalho, Rodrigo Dias de Oliveira, Azevedo, Vasco, Salles, Flavia Cristina da Silva, Nunes, Márcio Roberto Teixeira, Lemos, Poliana da Silva, Candido, Darlan da Silva, Pereira, Glauco de Carvalho, Oliveira, Marluce Aparecida Assunção, Meneses, Cátia Alexandra Ribeiro, Maito, Rodrigo Melo, Cunha, Claudeth Rocha Santa Brígida, Campos, Daniela Palha de Sousa, Castilho, Marcia da Costa, Siqueira, Thalita Caroline da Silva, Terra, Tiza Matos, de Albuquerque, Carlos F. Campelo, da Cruz, Laura Nogueira, de Abreu, André Luis, Martins, Divino Valerio, Simoes, Daniele Silva de Moraes Vanlume, de Aguiar, Renato Santana, Luz, Sérgio Luiz Bessa, Loman, Nicholas, Pybus, Oliver G., Sabino, Ester C., Okumoto, Osnei, Alcantara, Luiz Carlos Junior, Faria, Nuno Rodrigues
發表在 PLoS Negl Trop Dis (2019)