False discovery rate paradigms for statistical analyses of microarray gene expression data

מאת Cheng, Cheng, Pounds, Stan
יצא לאור 2007

Empirical Bayesian selection of hypothesis testing procedures for analysis of digital gene expression data

מאת Pounds, Stan, Gao, Cuilan
יצא לאור 2013

An R package that automatically collects and archives details for reproducible computing

מאת Liu, Zhifa, Pounds, Stan
יצא לאור 2014

Gene-set distance analysis (GSDA): a powerful tool for gene-set association analysis

מאת Cao, Xueyuan, Pounds, Stan
הוצא לאור ב BMC Bioinformatics (2021)

Assumption Adequacy Averaging as a Concept to Develop More Robust Methods for Differential Gene Expression Analysis

מאת Pounds, Stan, Rai, Shesh N.
יצא לאור 2009

Statistical Analysis of Data from Retroviral Clonal Experiments in the Developing Retina

מאת Pounds, Stan, Dyer, Michael A.
יצא לאור 2007

Our strategy to achieve and document reproducible computing

מאת Enyinda, Nisrine, Liu, Zhifa, Negatu, Areg, Pounds, Stan
יצא לאור 2013

A genomic random interval model for statistical analysis of genomic lesion data

מאת Pounds, Stan, Cheng, Cheng, Li, Shaoyu, Liu, Zhifa, Zhang, Jinghui, Mullighan, Charles
יצא לאור 2013

Subgroup and outlier detection analysis

מאת Wu, Gang, Pawlikowska, Iwona, Gruber, Tanja, Downing, James, Zhang, Jinghui, Pounds, Stan
יצא לאור 2013

Reference alignment of SNP microarray signals for copy number analysis of tumors

מאת Pounds, Stan, Cheng, Cheng, Mullighan, Charles, Raimondi, Susana C., Shurtleff, Sheila, Downing, James R.
יצא לאור 2009

A permutation-based method to identify loss-of-heterozygosity using paired genotype microarray data

מאת Pounds, Stan, Cheng, Cheng, Yang, Wenjian, Onar, Arzu, Hartford, Christine, Raimondi, Susana, Relling, Mary
יצא לאור 2008

The most informative spacing test effectively discovers biologically relevant outliers or multiple modes in expression

מאת Pawlikowska, Iwona, Wu, Gang, Edmonson, Michael, Liu, Zhifa, Gruber, Tanja, Zhang, Jinghui, Pounds, Stan
יצא לאור 2014

Dunn Index Bootstrap (DIBS): A procedure to empirically select a cluster analysis method that identifies biologically and clinically relevant molecular disease subgroups

מאת Pawlikowska, Iwona, Liu, Zhifa, Shi, Lei, Lin, Tong, Gruber, Tanja, Robinson, Giles, Onar-Thomas, Arzu, Pounds, Stan
הוצא לאור ב BMC Bioinformatics (2015)

Integrated Analysis of Pharmacologic, Clinical, and SNP Microarray Data using Projection onto the Most Interesting Statistical Evidence with Adaptive Permutation Testing

מאת Pounds, Stan, Cao, Xueyuan, Cheng, Cheng, Yang, Jun, Campana, Dario, Evans, William E., Pui, Ching-Hon, Relling, Mary V.
יצא לאור 2011

A procedure to statistically evaluate agreement of differential expression for cross-species genomics

מאת Pounds, Stan, Gao, Cuilan Lani, Johnson, Robert A., Wright, Karen D., Poppleton, Helen, Finkelstein, David, Leary, Sarah E. S., Gilbertson, Richard J.
יצא לאור 2011

PROMISE: a tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables

מאת Pounds, Stan, Cheng, Cheng, Cao, Xueyuan, Crews, Kristine R., Plunkett, William, Gandhi, Varsha, Rubnitz, Jeffrey, Ribeiro, Raul C., Downing, James R., Lamba, Jatinder
יצא לאור 2009

Genetics of pleiotropic effects of dexamethasone

מאת Ramsey, Laura B., Pounds, Stan, Cheng, Cheng, Cao, Xueyuan, Yang, Wenjian, Smith, Colton, Karol, Seth E., Liu, Chengcheng, Panetta, John C., Inaba, Hiroto, Rubnitz, Jeffrey E., Metzger, Monika L., Ribeiro, Raul C., Sandlund, John T., Jeha, Sima, Pui, Ching-Hon, Evans, William E., Relling, Mary V.
הוצא לאור ב Pharmacogenet Genomics (2017)

Genome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia

מאת Yang, Jun, Cheng, Cheng, Yang, Wenjian, Pei, Deqing, Cao, Xueyuan, Fan, Yiping, Pounds, Stan, Treviño, Lisa R., French, Deborah, Campana, Dario, Downing, James R., Evans, William E., Pui, Ching-Hon, Devidas, Meenakshi, Bowman, W.P., Camitta, Bruce M., Willman, Cheryl, Davies, Stella M., Borowitz, Michael J., Carroll, William L., Hunger, Stephen P., Relling, Mary V.
יצא לאור 2009

Molecular heterogeneity and CXorf67 alterations in posterior fossa group A (PFA) ependymomas

מאת Pajtler, Kristian W., Wen, Ji, Sill, Martin, Lin, Tong, Orisme, Wilda, Tang, Bo, Hübner, Jens-Martin, Ramaswamy, Vijay, Jia, Sujuan, Dalton, James D., Haupfear, Kelly, Rogers, Hazel A., Punchihewa, Chandanamali, Lee, Ryan, Easton, John, Wu, Gang, Ritzmann, Timothy A., Chapman, Rebecca, Chavez, Lukas, Boop, Fredrick A., Klimo, Paul, Sabin, Noah D., Ogg, Robert, Mack, Stephen C., Freibaum, Brian D., Kim, Hong Joo, Witt, Hendrik, Jones, David T.W., Vo, Baohan, Gajjar, Amar, Pounds, Stan, Onar-Thomas, Arzu, Roussel, Martine F., Zhang, Jinghui, Taylor, J. Paul, Merchant, Thomas E., Grundy, Richard, Tatevossian, Ruth G., Taylor, Michael D., Pfister, Stefan M., Korshunov, Andrey, Kool, Marcel, Ellison, David W.
הוצא לאור ב Acta Neuropathol (2018)