VARNA: Interactive drawing and editing of the RNA secondary structure

Por Darty, Kévin, Denise, Alain, Ponty, Yann
Publicado em 2009

A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution

Por Reinharz, Vladimir, Ponty, Yann, Waldispühl, Jérôme
Publicado em 2013

Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs

Por Reinharz, Vladimir, Ponty, Yann, Waldispühl, Jérôme
Publicado em 2013

Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces

Por Reinharz, Vladimir, Ponty, Yann, Waldispühl, Jérôme
Publicado no Nucleic Acids Res (2016)

Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach

Por Chauve, Cedric, Ponty, Yann, Zanetti, João Paulo Pereira
Publicado no BMC Bioinformatics (2015)

The BRaliBase dent—a tale of benchmark design and interpretation

Por Löwes, Benedikt, Chauve, Cedric, Ponty, Yann, Giegerich, Robert
Publicado no Brief Bioinform (2017)

Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

Por Senter, Evan, Sheikh, Saad, Dotu, Ivan, Ponty, Yann, Clote, Peter
Publicado em 2012

SPARCS: a web server to analyze (un)structured regions in coding RNA sequences

Por Zhang, Yang, Ponty, Yann, Blanchette, Mathieu, Lécuyer, Eric, Waldispühl, Jérôme
Publicado em 2013

incaRNAfbinv: a web server for the fragment-based design of RNA sequences

Por Drory Retwitzer, Matan, Reinharz, Vladimir, Ponty, Yann, Waldispühl, Jérôme, Barash, Danny
Publicado no Nucleic Acids Res (2016)

Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information

Por Lopes, Anne, Sacquin-Mora, Sophie, Dimitrova, Viktoriya, Laine, Elodie, Ponty, Yann, Carbone, Alessandra
Publicado em 2013

A global sampling approach to designing and reengineering RNA secondary structures

Por Levin, Alex, Lis, Mieszko, Ponty, Yann, O’Donnell, Charles W., Devadas, Srinivas, Berger, Bonnie, Waldispühl, Jérôme
Publicado em 2012

DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies

Por Duchemin, Wandrille, Anselmetti, Yoann, Patterson, Murray, Ponty, Yann, B�rard, S�verine, Chauve, Cedric, Scornavacca, Celine, Daubin, Vincent, Tannier, Eric
Publicado no Genome Biol Evol (2017)

Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame

Por Deforges, Jules, de Breyne, Sylvain, Ameur, Melissa, Ulryck, Nathalie, Chamond, Nathalie, Saaidi, Afaf, Ponty, Yann, Ohlmann, Theophile, Sargueil, Bruno
Publicado no Nucleic Acids Res (2017)

Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame

Por Deforges, Jules, de Breyne, Sylvain, Ameur, Melissa, Ulryck, Nathalie, Chamond, Nathalie, Saaidi, Afaf, Ponty, Yann, Ohlmann, Theophile, Sargueil, Bruno
Publicado no Nucleic Acids Res (2017)