Comparative Study of Methods for Detecting Sequence Compartmentalization in Human Immunodeficiency Virus Type 1

od Zárate, Selene, Pond, Sergei L. Kosakovsky, Shapshak, Paul, Frost, Simon D. W.
Izdano 2007

Detecting phylogenetic signal in mutualistic interaction networks using a Markov process model

od Minoarivelo, H. O., Hui, C., Terblanche, J. S., Pond, S. L. Kosakovsky, Scheffler, K.
Izdano 2014

A Dirichlet process model for detecting positive selection in protein-coding DNA sequences

od Huelsenbeck, John P., Jain, Sonia, Frost, Simon W. D., Pond, Sergei L. Kosakovsky
Izdano 2006

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope

od Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Izdano 2007

An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope

od Poon, Art F. Y, Lewis, Fraser I, Pond, Sergei L. Kosakovsky, Frost, Simon D. W
Izdano 2007

Selection analyses of paired HIV-1 gag and gp41 sequences obtained before and after antiretroviral therapy

od Tzou, Philip L., Rhee, Soo-Yon, Pond, Sergei L. Kosakovsky, Manasa, Justen, Shafer, Robert W.
izdano v Sci Data (2018)

Detection in 2009 of the Swine Origin Influenza A (H1N1) Virus by a Subtyping Microarray

od Lu, Qing, Zhang, Xing-Quan, Pond, Sergei L. Kosakovsky, Reed, Sharon, Schooley, Robert T., Liu, Yu-Tsueng
Izdano 2009

Molecular Features of the V1–V4 Coding Region of Sexually Transmitted Human Immunodeficiency Virus Type 1

od Choi, Jun Yong, Pond, Sergei L. Kosakovsky, Anderson, Christy M., Richman, Douglas D., Smith, Davey M.
izdano v J Infect Dis (2017)

Assigning and visualizing germline genes in antibody repertoires

od Frost, Simon D. W., Murrell, Ben, Hossain, A. S. Md. Mukarram, Silverman, Gregg J., Pond, Sergei L. Kosakovsky
izdano v Philos Trans R Soc Lond B Biol Sci (2015)

DIVEIN: A Web Server to Analyze Phylogenies, Sequence Divergence, Diversity, and Informative Sites

od Deng, Wenjie, Maust, Brandon S., Nickle, David C., Learn, Gerald H., Liu, Yi, Heath, Laura, Pond, Sergei L Kosakovsky, Mullins, James I.
Izdano 2010

Characterization of Human Immunodeficiency Virus Type 1 (HIV-1) Envelope Variation and Neutralizing Antibody Responses during Transmission of HIV-1 Subtype B

od Frost, Simon D. W., Liu, Yang, Pond, Sergei L. Kosakovsky, Chappey, Colombe, Wrin, Terri, Petropoulos, Christos J., Little, Susan J., Richman, Douglas D.
Izdano 2005

Coping with Viral Diversity in HIV Vaccine Design

od Nickle, David C, Rolland, Morgane, Jensen, Mark A, Pond, Sergei L. Kosakovsky, Deng, Wenjie, Seligman, Mark, Heckerman, David, Mullins, James I, Jojic, Nebojsa
Izdano 2007

Maintenance of Nef-Mediated Modulation of Major Histocompatibility Complex Class I and CD4 after Sexual Transmission of Human Immunodeficiency Virus Type 1

od Noviello, C. M., Pond, S. L. Kosakovsky, Lewis, M. J., Richman, D. D., Pillai, S. K., Yang, O. O., Little, S. J., Smith, D. M., Guatelli, J. C.
Izdano 2007

Persistence of Transmitted Drug Resistance among Subjects with Primary Human Immunodeficiency Virus Infection

od Little, Susan J., Frost, Simon D. W., Wong, Joseph K., Smith, Davey M., Pond, Sergei L. Kosakovsky, Ignacio, Caroline C., Parkin, Neil T., Petropoulos, Christos J., Richman, Douglas D.
Izdano 2008

Evolution of gag and gp41 in Patients Receiving Ritonavir-Boosted Protease Inhibitors

od Manasa, Justen, Varghese, Vici, Pond, Sergei L. Kosakovsky, Rhee, Soo-Yon, Tzou, Philip L., Fessel, W. Jeffrey, Jang, Karen S., White, Elizabeth, Rögnvaldsson, Thorsteinn, Katzenstein, David A., Shafer, Robert W.
izdano v Sci Rep (2017)

Estimating selection pressures on HIV-1 using phylogenetic likelihood models

od Pond, S. L. Kosakovsky, Poon, A. F. Y., Zárate, S., Smith, D. M., Little, S. J., Pillai, S. K., Ellis, R. J., Wong, J. K., Brown, A. J. Leigh, Richman, D. D., Frost, S. D .W.
Izdano 2008

HIV-1 Clade B pol Evolution following Primary Infection

od Hightower, George K., May, Susanne J., Pérez-Santiago, Josué, Pacold, Mary E., Wagner, Gabriel A., Little, Susan J., Richman, Douglas D., Mehta, Sanjay R., Smith, Davey M., Pond, Sergei L. Kosakovsky
Izdano 2013

Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection

od Frost, Simon D. W., Wrin, Terri, Smith, Davey M., Pond, Sergei L. Kosakovsky, Liu, Yang, Paxinos, Ellen, Chappey, Colombe, Galovich, Justin, Beauchaine, Jeff, Petropoulos, Christos J., Little, Susan J., Richman, Douglas D.
Izdano 2005

HIV-Associated Neurocognitive Disorder is Associated with HIV-1 Dual Infection

od WAGNER, Gabriel A., CHAILLON, Antoine, LIU, Siqi, FRANKLIN, Donald R., CABALLERO, Gemma, POND, Sergei L. KOSAKOVSKY, VAIDA, Florin, HEATON, Robert K., LETENDRE, Scott L., GRANT, Igor, RICHMAN, Douglas D., SMITH, Davey M.
izdano v AIDS (2016)

Viral Evolution and Cytotoxic T Cell Restricted Selection in Acute Infant HIV-1 Infection

od Garcia-Knight, Miguel A., Slyker, Jennifer, Payne, Barbara Lohman, Pond, Sergei L. Kosakovsky, de Silva, Thushan I., Chohan, Bhavna, Khasimwa, Brian, Mbori-Ngacha, Dorothy, John-Stewart, Grace, Rowland-Jones, Sarah L., Esbjörnsson, Joakim
izdano v Sci Rep (2016)