JOA: Joint Overlap Analysis of multiple genomic interval sets

由 Otlu, Burçak, Can, Tolga
發表在 BMC Bioinformatics (2019)

GLANET: genomic loci annotation and enrichment tool

由 Otlu, Burçak, Firtina, Can, Keleş, Sündüz, Tastan, Oznur
發表在 Bioinformatics (2017)

Integromic Analysis of Genetic Variation and Gene Expression Identifies Networks for Cardiovascular Disease Phenotypes

由 Yao, Chen, Chen, Brian H., Joehanes, Roby, Otlu, Burcak, Zhang, Xiaoling, Liu, Chunyu, Huan, Tianxiao, Tastan, Oznur, Cupples, L. Adrienne, Meigs, James B., Fox, Caroline S., Freedman, Jane E., Courchesne, Paul, O’Donnell, Christopher J., Munson, Peter J., Keles, Sunduz, Levy, Daniel
發表在 Circulation (2014)

The genomic and epigenomic evolutionary history of papillary renal cell carcinomas

由 Zhu, Bin, Poeta, Maria Luana, Costantini, Manuela, Zhang, Tongwu, Shi, Jianxin, Sentinelli, Steno, Zhao, Wei, Pompeo, Vincenzo, Cardelli, Maurizio, Alexandrov, Boian S., Otlu, Burcak, Hua, Xing, Jones, Kristine, Brodie, Seth, Dabrowska, Malgorzata Ewa, Toro, Jorge R., Yeager, Meredith, Wang, Mingyi, Hicks, Belynda, Alexandrov, Ludmil B., Brown, Kevin M., Wedge, David C., Chanock, Stephen, Fazio, Vito Michele, Gallucci, Michele, Landi, Maria Teresa
發表在 Nat Commun (2020)

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

由 Petljak, Mia, Alexandrov, Ludmil B., Brammeld, Jonathan S., Price, Stacey, Wedge, David C., Grossmann, Sebastian, Dawson, Kevin J., Ju, Young Seok, Iorio, Francesco, Tubio, Jose M.C., Koh, Ching Chiek, Georgakopoulos-Soares, Ilias, Rodríguez–Martín, Bernardo, Otlu, Burçak, O’Meara, Sarah, Butler, Adam P., Menzies, Andrew, Bhosle, Shriram G., Raine, Keiran, Jones, David R., Teague, Jon W., Beal, Kathryn, Latimer, Calli, O’Neill, Laura, Zamora, Jorge, Anderson, Elizabeth, Patel, Nikita, Maddison, Mark, Ng, Bee Ling, Graham, Jennifer, Garnett, Mathew J., McDermott, Ultan, Nik-Zainal, Serena, Campbell, Peter J., Stratton, Michael R.
發表在 Cell (2019)