Dynamical Model of Drug Accumulation in Bacteria: Sensitivity Analysis and Experimentally Testable Predictions

par Vesselinova, Neda, Alexandrov, Boian S., Wall, Michael E.
Publié dans PLoS One (2016)

Nonlinearity in DNA and its Relation to Specific Functions

par Alexandrov, Boian, Rasmussen, Kim Ø., Bishop, Alan R.
Publié 2009

The role of structural parameters in DNA cyclization

par Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Alexandrov, Boian S.
Publié dans BMC Bioinformatics (2016)

Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization

par Alexandrov, Ludmil B., Rasmussen, Kim Ø., Bishop, Alan R., Alexandrov, Boian S.
Publié dans Sci Rep (2017)

Nonnegative Matrix Factorization for identification of unknown number of sources emitting delayed signals

par Iliev, Filip L., Stanev, Valentin G., Vesselinov, Velimir V., Alexandrov, Boian S.
Publié dans PLoS One (2018)

Nonnegative/Binary matrix factorization with a D-Wave quantum annealer

par O’Malley, Daniel, Vesselinov, Velimir V., Alexandrov, Boian S., Alexandrov, Ludmil B.
Publié dans PLoS One (2018)

Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter

par Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publié 2009

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

par Alexandrov, Boian S., Gelev, Vladimir, Monisova, Yevgeniya, Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publié 2009

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells

par Alexandrov, Boian S., Fukuyo, Yayoi, Lange, Martin, Horikoshi, Nobuo, Gelev, Vladimir, Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publié 2012

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation

par Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Alexandrov, Ludmil B., Fukuyo, Yayoi, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publié 2010

Metabolomics and the pig model reveal aberrant cardiac energy metabolism in metabolic syndrome

par Karimi, Maryam, Petkova, Victoria, Asara, John M., Griffin, Michael J., Sellke, Frank W., Bishop, Alan R., Alexandrov, Boian S., Usheva, Anny
Publié dans Sci Rep (2020)

Correction: DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

par Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publié 2011

DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

par Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publié 2011

Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics

par Nowak-Lovato, Kristy, Alexandrov, Ludmil B., Banisadr, Afsheen, Bauer, Amy L., Bishop, Alan R., Usheva, Anny, Mu, Fangping, Hong-Geller, Elizabeth, Rasmussen, Kim Ø., Hlavacek, William S., Alexandrov, Boian S.
Publié 2013

Robust effect of metabolic syndrome on major metabolic pathways in the myocardium

par Karimi, Maryam, Pavlov, Vasile I., Ziegler, Olivia, Sriram, Nivedita, Yoon, Se-Young, Agbortoko, Vahid, Alexandrova, Stoiana, Asara, John, Sellke, Frank W., Sturek, Michael, Feng, Jun, Alexandrov, Boian S., Usheva, Anny
Publié dans PLoS One (2019)

Profiling the Thermodynamic Softness of Adenoviral Promoters

par Choi, Chu H., Rapti, Zoi, Gelev, Vladimir, Hacker, Michele R., Alexandrov, Boian, Park, Evelyn J., Park, Jae Suk, Horikoshi, Nobuo, Smerzi, Augusto, Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publié 2008

Mammalian Stem Cells Reprogramming in Response to Terahertz Radiation

par Bock, Jonathan, Fukuyo, Yayoi, Kang, Sona, Phipps, M. Lisa, Alexandrov, Ludmil B., Rasmussen, Kim Ø., Bishop, Alan R., Rosen, Evan D., Martinez, Jennifer S., Chen, Hou-Tong, Rodriguez, George, Alexandrov, Boian S., Usheva, Anny
Publié 2010

Non-thermal effects of terahertz radiation on gene expression in mouse stem cells

par Alexandrov, Boian S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny, Alexandrov, Ludmil B., Chong, Shou, Dagon, Yossi, Booshehri, Layla G., Mielke, Charles H., Phipps, M. Lisa, Martinez, Jennifer S., Chen, Hou-Tong, Rodriguez, George
Publié 2011

Specificity and Heterogeneity of Terahertz Radiation Effect on Gene Expression in Mouse Mesenchymal Stem Cells

par Alexandrov, Boian S., Phipps, M. Lisa, Alexandrov, Ludmil B., Booshehri, Layla G., Erat, Anna, Zabolotny, Janice, Mielke, Charles H., Chen, Hou-Tong, Rodriguez, George, Rasmussen, Kim Ø., Martinez, Jennifer S., Bishop, Alan R., Usheva, Anny
Publié 2013

A Rare Functional Noncoding Variant at the GWAS-Implicated MIR137/MIR2682 Locus Might Confer Risk to Schizophrenia and Bipolar Disorder

par Duan, Jubao, Shi, Jianxin, Fiorentino, Alessia, Leites, Catherine, Chen, Xiangning, Moy, Winton, Chen, Jingchun, Alexandrov, Boian S., Usheva, Anny, He, Deli, Freda, Jessica, O’Brien, Niamh L., McQuillin, Andrew, Sanders, Alan R., Gershon, Elliot S., DeLisi, Lynn E., Bishop, Alan R., Gurling, Hugh M.D., Pato, Michele T., Levinson, Douglas F., Kendler, Kenneth S., Pato, Carlos N., Gejman, Pablo V.
Publié dans Am J Hum Genet (2014)