Antibiotic discovery is a walk in the park

由 Nothias, Louis-Félix, Knight, Rob, Dorrestein, Pieter C.
發表在 Proc Natl Acad Sci U S A (2016)

Specialized Metabolites from Ribosome Engineered Strains of Streptomyces clavuligerus

由 Shaikh, Arshad Ali, Nothias, Louis-Felix, Srivastava, Santosh K., Dorrestein, Pieter C., Tahlan, Kapil
發表在 Metabolites (2021)

Genomic and Metabolomic Analysis of the Potato Common Scab Pathogen Streptomyces scabiei

由 Liu, Jingyu, Nothias, Louis-Félix, Dorrestein, Pieter C., Tahlan, Kapil, Bignell, Dawn R. D.
發表在 ACS Omega (2021)

Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog Colostethus panamansis (Anura: Dendrobatidae)

由 Martin H., Christian, Ibáñez, Roberto, Nothias, Louis-Félix, Caraballo-Rodríguez, Andrés Mauricio, Dorrestein, Pieter C., Gutiérrez, Marcelino
發表在 Metabolites (2020)

Significance estimation for large scale metabolomics annotations by spectral matching

由 Scheubert, Kerstin, Hufsky, Franziska, Petras, Daniel, Wang, Mingxun, Nothias, Louis-Félix, Dührkop, Kai, Bandeira, Nuno, Dorrestein, Pieter C., Böcker, Sebastian
發表在 Nat Commun (2017)

Dereplication of peptidic natural products through database search of mass spectra

由 Mohimani, Hosein, Gurevich, Alexey, Mikheenko, Alla, Garg, Neha, Nothias, Louis-Felix, Ninomiya, Akihiro, Takada, Kentaro, Dorrestein, Pieter C., Pevzner, Pavel A.
發表在 Nat Chem Biol (2016)

Identification of four amoebicidal non-toxic compounds by a molecular docking screen of Naegleria fowleri sterol Δ8−Δ7-isomerase and phenotypic assays

由 Shi, Da, Chahal, Kirti Kandhwal, Oto, Patricia, Nothias, Louis-Felix, Debnath, Anjan, McKerrow, James H., Podust, Larissa M., Abagyan, Ruben
發表在 ACS Infect Dis (2019)

Dereplication of microbial metabolites through database search of mass spectra

由 Mohimani, Hosein, Gurevich, Alexey, Shlemov, Alexander, Mikheenko, Alla, Korobeynikov, Anton, Cao, Liu, Shcherbin, Egor, Nothias, Louis-Felix, Dorrestein, Pieter C., Pevzner, Pavel A.
發表在 Nat Commun (2018)

Viscosin-like lipopeptides from frog skin bacteria inhibit Aspergillus fumigatus and Batrachochytrium dendrobatidis detected by imaging mass spectrometry and molecular networking

由 Martin H., Christian, Ibáñez, Roberto, Nothias, Louis-Félix, Boya P., Cristopher A., Reinert, Laura K., Rollins-Smith, Louise A., Dorrestein, Pieter C., Gutiérrez, Marcelino
發表在 Sci Rep (2019)

Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism

由 AbuSara, Nader F., Piercey, Brandon M., Moore, Marcus A., Shaikh, Arshad Ali, Nothias, Louis-Félix, Srivastava, Santosh K., Cruz-Morales, Pablo, Dorrestein, Pieter C., Barona-Gómez, Francisco, Tahlan, Kapil
發表在 Front Microbiol (2019)

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

由 Ernst, Madeleine, Kang, Kyo Bin, Caraballo-Rodríguez, Andrés Mauricio, Nothias, Louis-Felix, Wandy, Joe, Chen, Christopher, Wang, Mingxun, Rogers, Simon, Medema, Marnix H., Dorrestein, Pieter C., van der Hooft, Justin J.J.
發表在 Metabolites (2019)

Propagating annotations of molecular networks using in silico fragmentation

由 da Silva, Ricardo R., Wang, Mingxun, Nothias, Louis-Félix, van der Hooft, Justin J. J., Caraballo-Rodríguez, Andrés Mauricio, Fox, Evan, Balunas, Marcy J., Klassen, Jonathan L., Lopes, Norberto Peporine, Dorrestein, Pieter C.
發表在 PLoS Comput Biol (2018)

Niche partitioning of a pathogenic microbiome driven by chemical gradients

由 Quinn, Robert A., Comstock, William, Zhang, Tianyu, Morton, James T., da Silva, Ricardo, Tran, Alda, Aksenov, Alexander, Nothias, Louis-Felix, Wangpraseurt, Daniel, Melnik, Alexey V., Ackermann, Gail, Conrad, Douglas, Klapper, Isaac, Knight, Rob, Dorrestein, Pieter C.
發表在 Sci Adv (2018)

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism

由 Galtier d'Auriac, Ines, Quinn, Robert A., Maughan, Heather, Nothias, Louis-Felix, Little, Mark, Kapono, Clifford A., Cobian, Ana, Reyes, Brandon T., Green, Kevin, Quistad, Steven D., Leray, Matthieu, Smith, Jennifer E., Dorrestein, Pieter C., Rohwer, Forest, Deheyn, Dimitri D., Hartmann, Aaron C.
發表在 Proc Biol Sci (2018)

Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L.

由 Ernst, Madeleine, Nothias, Louis-Félix, van der Hooft, Justin J. J., Silva, Ricardo R., Saslis-Lagoudakis, C. Haris, Grace, Olwen M., Martinez-Swatson, Karen, Hassemer, Gustavo, Funez, Luís A., Simonsen, Henrik T., Medema, Marnix H., Staerk, Dan, Nilsson, Niclas, Lovato, Paola, Dorrestein, Pieter C., Rønsted, Nina
發表在 Front Plant Sci (2019)

A Convolutional Neural Network-based approach for the Rapid Annotation of Molecularly Diverse Natural Products

由 Reher, Raphael, Kim, Hyun Woo, Zhang, Chen, Mao, Huanru Henry, Wang, Mingxun, Nothias, Louis-Félix, Caraballo-Rodriguez, Andres Mauricio, Glukhov, Evgenia, Teke, Bahar, Leao, Tiago, Alexander, Kelsey L., Duggan, Brendan M., Van Everbroeck, Ezra L., Dorrestein, Pieter C., Cottrell, Garrison W., Gerwick, William H.
發表在 J Am Chem Soc (2020)

Learning accurate representations of microbe-metabolite interactions

由 Morton, James T., Aksenov, Alexander A., Nothias, Louis Felix, Foulds, James R., Quinn, Robert A., Badri, Michelle H., Swenson, Tami L., Van Goethem, Marc W., Northen, Trent R., Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A., Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C., Knight, Rob
發表在 Nat Methods (2019)

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

由 Tripathi, Anupriya, Vázquez-Baeza, Yoshiki, Gauglitz, Julia M., Wang, Mingxun, Dührkop, Kai, Nothias-Esposito, Mélissa, Acharya, Deepa D., Ernst, Madeleine, van der Hooft, Justin J.J., Zhu, Qiyun, McDonald, Daniel, Brejnrod, Asker D., Gonzalez, Antonio, Handelsman, Jo, Fleischauer, Markus, Ludwig, Marcus, Böcker, Sebastian, Nothias, Louis-Félix, Knight, Rob, Dorrestein, Pieter C.
發表在 Nat Chem Biol (2020)

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

由 Cao, Liu, Gurevich, Alexey, Alexander, Kelsey L., Naman, C. Benjamin, Leão, Tiago, Glukhov, Evgenia, Luzzatto-Knaan, Tal, Vargas, Fernando, Quinn, Robby, Bouslimani, Amina, Nothias, Louis Felix, Singh, Nitin K., Sanders, Jon G., Benitez, Rodolfo A. S., Thompson, Luke R., Hamid, Md-Nafiz, Morton, James T., Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Friedberg, Iddo, Knight, Rob, Venkateswaran, Kasthuri, Gerwick, William H., Gerwick, Lena, Dorrestein, Pieter C., Pevzner, Pavel A., Mohimani, Hosein
發表在 Cell Syst (2019)

Mass Spectrometry-Based 3D Cartography Displays the Chemistry Associated with Modern Human Habitats

由 Petras, Daniel, Nothias, Louis-Félix, Quinn, Robert A., Alexandrov, Theodore, Bandeira, Nuno, Bouslimani, Amina, Castro-Falcón, Gabriel, Chen, Liangyu, Dang, Tam, Floros, Dimitrios J, Hook, Vivian, Garg, Neha, Hoffner, Nicole, Jiang, Yike, Kapono, Clifford A., Koester, Irina, Knight, Rob, Leber, Christopher A, Ling, Tie-Jun, Luzzatto-Knaan, Tal, McCall, Laura-Isobel, McGrath, Aaron P., Meehan, Michael J., Merritt, Jonathan K., Mills, Robert H., Morton, Jamie, Podvin, Sonia, Protsyuk, Ivan, Purdy, Trevor, Satterfield, Kendall, Searles, Stephen, Shah, Sahil, Shires, Sarah, Steffen, Dana, White, Margot, Todoric, Jelena, Tuttle, Robert, Wojnicz, Aneta, Sapp, Valerie, Vargas, Fernando, Yang, Jin, Zhang, Chao, Dorrestein, Pieter C.
發表在 Anal Chem (2016)