Antibiotic discovery is a walk in the park

מאת Nothias, Louis-Félix, Knight, Rob, Dorrestein, Pieter C.
הוצא לאור ב Proc Natl Acad Sci U S A (2016)

Specialized Metabolites from Ribosome Engineered Strains of Streptomyces clavuligerus

מאת Shaikh, Arshad Ali, Nothias, Louis-Felix, Srivastava, Santosh K., Dorrestein, Pieter C., Tahlan, Kapil
הוצא לאור ב Metabolites (2021)

Genomic and Metabolomic Analysis of the Potato Common Scab Pathogen Streptomyces scabiei

מאת Liu, Jingyu, Nothias, Louis-Félix, Dorrestein, Pieter C., Tahlan, Kapil, Bignell, Dawn R. D.
הוצא לאור ב ACS Omega (2021)

Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog Colostethus panamansis (Anura: Dendrobatidae)

מאת Martin H., Christian, Ibáñez, Roberto, Nothias, Louis-Félix, Caraballo-Rodríguez, Andrés Mauricio, Dorrestein, Pieter C., Gutiérrez, Marcelino
הוצא לאור ב Metabolites (2020)

Significance estimation for large scale metabolomics annotations by spectral matching

מאת Scheubert, Kerstin, Hufsky, Franziska, Petras, Daniel, Wang, Mingxun, Nothias, Louis-Félix, Dührkop, Kai, Bandeira, Nuno, Dorrestein, Pieter C., Böcker, Sebastian
הוצא לאור ב Nat Commun (2017)

Dereplication of peptidic natural products through database search of mass spectra

מאת Mohimani, Hosein, Gurevich, Alexey, Mikheenko, Alla, Garg, Neha, Nothias, Louis-Felix, Ninomiya, Akihiro, Takada, Kentaro, Dorrestein, Pieter C., Pevzner, Pavel A.
הוצא לאור ב Nat Chem Biol (2016)

Identification of four amoebicidal non-toxic compounds by a molecular docking screen of Naegleria fowleri sterol Δ8−Δ7-isomerase and phenotypic assays

מאת Shi, Da, Chahal, Kirti Kandhwal, Oto, Patricia, Nothias, Louis-Felix, Debnath, Anjan, McKerrow, James H., Podust, Larissa M., Abagyan, Ruben
הוצא לאור ב ACS Infect Dis (2019)

Dereplication of microbial metabolites through database search of mass spectra

מאת Mohimani, Hosein, Gurevich, Alexey, Shlemov, Alexander, Mikheenko, Alla, Korobeynikov, Anton, Cao, Liu, Shcherbin, Egor, Nothias, Louis-Felix, Dorrestein, Pieter C., Pevzner, Pavel A.
הוצא לאור ב Nat Commun (2018)

Viscosin-like lipopeptides from frog skin bacteria inhibit Aspergillus fumigatus and Batrachochytrium dendrobatidis detected by imaging mass spectrometry and molecular networking

מאת Martin H., Christian, Ibáñez, Roberto, Nothias, Louis-Félix, Boya P., Cristopher A., Reinert, Laura K., Rollins-Smith, Louise A., Dorrestein, Pieter C., Gutiérrez, Marcelino
הוצא לאור ב Sci Rep (2019)

Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism

מאת AbuSara, Nader F., Piercey, Brandon M., Moore, Marcus A., Shaikh, Arshad Ali, Nothias, Louis-Félix, Srivastava, Santosh K., Cruz-Morales, Pablo, Dorrestein, Pieter C., Barona-Gómez, Francisco, Tahlan, Kapil
הוצא לאור ב Front Microbiol (2019)

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

מאת Ernst, Madeleine, Kang, Kyo Bin, Caraballo-Rodríguez, Andrés Mauricio, Nothias, Louis-Felix, Wandy, Joe, Chen, Christopher, Wang, Mingxun, Rogers, Simon, Medema, Marnix H., Dorrestein, Pieter C., van der Hooft, Justin J.J.
הוצא לאור ב Metabolites (2019)

Propagating annotations of molecular networks using in silico fragmentation

מאת da Silva, Ricardo R., Wang, Mingxun, Nothias, Louis-Félix, van der Hooft, Justin J. J., Caraballo-Rodríguez, Andrés Mauricio, Fox, Evan, Balunas, Marcy J., Klassen, Jonathan L., Lopes, Norberto Peporine, Dorrestein, Pieter C.
הוצא לאור ב PLoS Comput Biol (2018)

Niche partitioning of a pathogenic microbiome driven by chemical gradients

מאת Quinn, Robert A., Comstock, William, Zhang, Tianyu, Morton, James T., da Silva, Ricardo, Tran, Alda, Aksenov, Alexander, Nothias, Louis-Felix, Wangpraseurt, Daniel, Melnik, Alexey V., Ackermann, Gail, Conrad, Douglas, Klapper, Isaac, Knight, Rob, Dorrestein, Pieter C.
הוצא לאור ב Sci Adv (2018)

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism

מאת Galtier d'Auriac, Ines, Quinn, Robert A., Maughan, Heather, Nothias, Louis-Felix, Little, Mark, Kapono, Clifford A., Cobian, Ana, Reyes, Brandon T., Green, Kevin, Quistad, Steven D., Leray, Matthieu, Smith, Jennifer E., Dorrestein, Pieter C., Rohwer, Forest, Deheyn, Dimitri D., Hartmann, Aaron C.
הוצא לאור ב Proc Biol Sci (2018)

Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L.

מאת Ernst, Madeleine, Nothias, Louis-Félix, van der Hooft, Justin J. J., Silva, Ricardo R., Saslis-Lagoudakis, C. Haris, Grace, Olwen M., Martinez-Swatson, Karen, Hassemer, Gustavo, Funez, Luís A., Simonsen, Henrik T., Medema, Marnix H., Staerk, Dan, Nilsson, Niclas, Lovato, Paola, Dorrestein, Pieter C., Rønsted, Nina
הוצא לאור ב Front Plant Sci (2019)

A Convolutional Neural Network-based approach for the Rapid Annotation of Molecularly Diverse Natural Products

מאת Reher, Raphael, Kim, Hyun Woo, Zhang, Chen, Mao, Huanru Henry, Wang, Mingxun, Nothias, Louis-Félix, Caraballo-Rodriguez, Andres Mauricio, Glukhov, Evgenia, Teke, Bahar, Leao, Tiago, Alexander, Kelsey L., Duggan, Brendan M., Van Everbroeck, Ezra L., Dorrestein, Pieter C., Cottrell, Garrison W., Gerwick, William H.
הוצא לאור ב J Am Chem Soc (2020)

Learning accurate representations of microbe-metabolite interactions

מאת Morton, James T., Aksenov, Alexander A., Nothias, Louis Felix, Foulds, James R., Quinn, Robert A., Badri, Michelle H., Swenson, Tami L., Van Goethem, Marc W., Northen, Trent R., Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A., Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C., Knight, Rob
הוצא לאור ב Nat Methods (2019)

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

מאת Tripathi, Anupriya, Vázquez-Baeza, Yoshiki, Gauglitz, Julia M., Wang, Mingxun, Dührkop, Kai, Nothias-Esposito, Mélissa, Acharya, Deepa D., Ernst, Madeleine, van der Hooft, Justin J.J., Zhu, Qiyun, McDonald, Daniel, Brejnrod, Asker D., Gonzalez, Antonio, Handelsman, Jo, Fleischauer, Markus, Ludwig, Marcus, Böcker, Sebastian, Nothias, Louis-Félix, Knight, Rob, Dorrestein, Pieter C.
הוצא לאור ב Nat Chem Biol (2020)

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

מאת Cao, Liu, Gurevich, Alexey, Alexander, Kelsey L., Naman, C. Benjamin, Leão, Tiago, Glukhov, Evgenia, Luzzatto-Knaan, Tal, Vargas, Fernando, Quinn, Robby, Bouslimani, Amina, Nothias, Louis Felix, Singh, Nitin K., Sanders, Jon G., Benitez, Rodolfo A. S., Thompson, Luke R., Hamid, Md-Nafiz, Morton, James T., Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Friedberg, Iddo, Knight, Rob, Venkateswaran, Kasthuri, Gerwick, William H., Gerwick, Lena, Dorrestein, Pieter C., Pevzner, Pavel A., Mohimani, Hosein
הוצא לאור ב Cell Syst (2019)

Mass Spectrometry-Based 3D Cartography Displays the Chemistry Associated with Modern Human Habitats

מאת Petras, Daniel, Nothias, Louis-Félix, Quinn, Robert A., Alexandrov, Theodore, Bandeira, Nuno, Bouslimani, Amina, Castro-Falcón, Gabriel, Chen, Liangyu, Dang, Tam, Floros, Dimitrios J, Hook, Vivian, Garg, Neha, Hoffner, Nicole, Jiang, Yike, Kapono, Clifford A., Koester, Irina, Knight, Rob, Leber, Christopher A, Ling, Tie-Jun, Luzzatto-Knaan, Tal, McCall, Laura-Isobel, McGrath, Aaron P., Meehan, Michael J., Merritt, Jonathan K., Mills, Robert H., Morton, Jamie, Podvin, Sonia, Protsyuk, Ivan, Purdy, Trevor, Satterfield, Kendall, Searles, Stephen, Shah, Sahil, Shires, Sarah, Steffen, Dana, White, Margot, Todoric, Jelena, Tuttle, Robert, Wojnicz, Aneta, Sapp, Valerie, Vargas, Fernando, Yang, Jin, Zhang, Chao, Dorrestein, Pieter C.
הוצא לאור ב Anal Chem (2016)