Antibiotic discovery is a walk in the park

par Nothias, Louis-Félix, Knight, Rob, Dorrestein, Pieter C.
Publié dans Proc Natl Acad Sci U S A (2016)

Specialized Metabolites from Ribosome Engineered Strains of Streptomyces clavuligerus

par Shaikh, Arshad Ali, Nothias, Louis-Felix, Srivastava, Santosh K., Dorrestein, Pieter C., Tahlan, Kapil
Publié dans Metabolites (2021)

Genomic and Metabolomic Analysis of the Potato Common Scab Pathogen Streptomyces scabiei

par Liu, Jingyu, Nothias, Louis-Félix, Dorrestein, Pieter C., Tahlan, Kapil, Bignell, Dawn R. D.
Publié dans ACS Omega (2021)

Metabolites from Microbes Isolated from the Skin of the Panamanian Rocket Frog Colostethus panamansis (Anura: Dendrobatidae)

par Martin H., Christian, Ibáñez, Roberto, Nothias, Louis-Félix, Caraballo-Rodríguez, Andrés Mauricio, Dorrestein, Pieter C., Gutiérrez, Marcelino
Publié dans Metabolites (2020)

Significance estimation for large scale metabolomics annotations by spectral matching

par Scheubert, Kerstin, Hufsky, Franziska, Petras, Daniel, Wang, Mingxun, Nothias, Louis-Félix, Dührkop, Kai, Bandeira, Nuno, Dorrestein, Pieter C., Böcker, Sebastian
Publié dans Nat Commun (2017)

Dereplication of peptidic natural products through database search of mass spectra

par Mohimani, Hosein, Gurevich, Alexey, Mikheenko, Alla, Garg, Neha, Nothias, Louis-Felix, Ninomiya, Akihiro, Takada, Kentaro, Dorrestein, Pieter C., Pevzner, Pavel A.
Publié dans Nat Chem Biol (2016)

Identification of four amoebicidal non-toxic compounds by a molecular docking screen of Naegleria fowleri sterol Δ8−Δ7-isomerase and phenotypic assays

par Shi, Da, Chahal, Kirti Kandhwal, Oto, Patricia, Nothias, Louis-Felix, Debnath, Anjan, McKerrow, James H., Podust, Larissa M., Abagyan, Ruben
Publié dans ACS Infect Dis (2019)

Dereplication of microbial metabolites through database search of mass spectra

par Mohimani, Hosein, Gurevich, Alexey, Shlemov, Alexander, Mikheenko, Alla, Korobeynikov, Anton, Cao, Liu, Shcherbin, Egor, Nothias, Louis-Felix, Dorrestein, Pieter C., Pevzner, Pavel A.
Publié dans Nat Commun (2018)

Viscosin-like lipopeptides from frog skin bacteria inhibit Aspergillus fumigatus and Batrachochytrium dendrobatidis detected by imaging mass spectrometry and molecular networking

par Martin H., Christian, Ibáñez, Roberto, Nothias, Louis-Félix, Boya P., Cristopher A., Reinert, Laura K., Rollins-Smith, Louise A., Dorrestein, Pieter C., Gutiérrez, Marcelino
Publié dans Sci Rep (2019)

Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism

par AbuSara, Nader F., Piercey, Brandon M., Moore, Marcus A., Shaikh, Arshad Ali, Nothias, Louis-Félix, Srivastava, Santosh K., Cruz-Morales, Pablo, Dorrestein, Pieter C., Barona-Gómez, Francisco, Tahlan, Kapil
Publié dans Front Microbiol (2019)

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools

par Ernst, Madeleine, Kang, Kyo Bin, Caraballo-Rodríguez, Andrés Mauricio, Nothias, Louis-Felix, Wandy, Joe, Chen, Christopher, Wang, Mingxun, Rogers, Simon, Medema, Marnix H., Dorrestein, Pieter C., van der Hooft, Justin J.J.
Publié dans Metabolites (2019)

Propagating annotations of molecular networks using in silico fragmentation

par da Silva, Ricardo R., Wang, Mingxun, Nothias, Louis-Félix, van der Hooft, Justin J. J., Caraballo-Rodríguez, Andrés Mauricio, Fox, Evan, Balunas, Marcy J., Klassen, Jonathan L., Lopes, Norberto Peporine, Dorrestein, Pieter C.
Publié dans PLoS Comput Biol (2018)

Niche partitioning of a pathogenic microbiome driven by chemical gradients

par Quinn, Robert A., Comstock, William, Zhang, Tianyu, Morton, James T., da Silva, Ricardo, Tran, Alda, Aksenov, Alexander, Nothias, Louis-Felix, Wangpraseurt, Daniel, Melnik, Alexey V., Ackermann, Gail, Conrad, Douglas, Klapper, Isaac, Knight, Rob, Dorrestein, Pieter C.
Publié dans Sci Adv (2018)

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism

par Galtier d'Auriac, Ines, Quinn, Robert A., Maughan, Heather, Nothias, Louis-Felix, Little, Mark, Kapono, Clifford A., Cobian, Ana, Reyes, Brandon T., Green, Kevin, Quistad, Steven D., Leray, Matthieu, Smith, Jennifer E., Dorrestein, Pieter C., Rohwer, Forest, Deheyn, Dimitri D., Hartmann, Aaron C.
Publié dans Proc Biol Sci (2018)

Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L.

par Ernst, Madeleine, Nothias, Louis-Félix, van der Hooft, Justin J. J., Silva, Ricardo R., Saslis-Lagoudakis, C. Haris, Grace, Olwen M., Martinez-Swatson, Karen, Hassemer, Gustavo, Funez, Luís A., Simonsen, Henrik T., Medema, Marnix H., Staerk, Dan, Nilsson, Niclas, Lovato, Paola, Dorrestein, Pieter C., Rønsted, Nina
Publié dans Front Plant Sci (2019)

A Convolutional Neural Network-based approach for the Rapid Annotation of Molecularly Diverse Natural Products

par Reher, Raphael, Kim, Hyun Woo, Zhang, Chen, Mao, Huanru Henry, Wang, Mingxun, Nothias, Louis-Félix, Caraballo-Rodriguez, Andres Mauricio, Glukhov, Evgenia, Teke, Bahar, Leao, Tiago, Alexander, Kelsey L., Duggan, Brendan M., Van Everbroeck, Ezra L., Dorrestein, Pieter C., Cottrell, Garrison W., Gerwick, William H.
Publié dans J Am Chem Soc (2020)

Learning accurate representations of microbe-metabolite interactions

par Morton, James T., Aksenov, Alexander A., Nothias, Louis Felix, Foulds, James R., Quinn, Robert A., Badri, Michelle H., Swenson, Tami L., Van Goethem, Marc W., Northen, Trent R., Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A., Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C., Knight, Rob
Publié dans Nat Methods (2019)

Chemically informed analyses of metabolomics mass spectrometry data with Qemistree

par Tripathi, Anupriya, Vázquez-Baeza, Yoshiki, Gauglitz, Julia M., Wang, Mingxun, Dührkop, Kai, Nothias-Esposito, Mélissa, Acharya, Deepa D., Ernst, Madeleine, van der Hooft, Justin J.J., Zhu, Qiyun, McDonald, Daniel, Brejnrod, Asker D., Gonzalez, Antonio, Handelsman, Jo, Fleischauer, Markus, Ludwig, Marcus, Böcker, Sebastian, Nothias, Louis-Félix, Knight, Rob, Dorrestein, Pieter C.
Publié dans Nat Chem Biol (2020)

MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities

par Cao, Liu, Gurevich, Alexey, Alexander, Kelsey L., Naman, C. Benjamin, Leão, Tiago, Glukhov, Evgenia, Luzzatto-Knaan, Tal, Vargas, Fernando, Quinn, Robby, Bouslimani, Amina, Nothias, Louis Felix, Singh, Nitin K., Sanders, Jon G., Benitez, Rodolfo A. S., Thompson, Luke R., Hamid, Md-Nafiz, Morton, James T., Mikheenko, Alla, Shlemov, Alexander, Korobeynikov, Anton, Friedberg, Iddo, Knight, Rob, Venkateswaran, Kasthuri, Gerwick, William H., Gerwick, Lena, Dorrestein, Pieter C., Pevzner, Pavel A., Mohimani, Hosein
Publié dans Cell Syst (2019)

Mass Spectrometry-Based 3D Cartography Displays the Chemistry Associated with Modern Human Habitats

par Petras, Daniel, Nothias, Louis-Félix, Quinn, Robert A., Alexandrov, Theodore, Bandeira, Nuno, Bouslimani, Amina, Castro-Falcón, Gabriel, Chen, Liangyu, Dang, Tam, Floros, Dimitrios J, Hook, Vivian, Garg, Neha, Hoffner, Nicole, Jiang, Yike, Kapono, Clifford A., Koester, Irina, Knight, Rob, Leber, Christopher A, Ling, Tie-Jun, Luzzatto-Knaan, Tal, McCall, Laura-Isobel, McGrath, Aaron P., Meehan, Michael J., Merritt, Jonathan K., Mills, Robert H., Morton, Jamie, Podvin, Sonia, Protsyuk, Ivan, Purdy, Trevor, Satterfield, Kendall, Searles, Stephen, Shah, Sahil, Shires, Sarah, Steffen, Dana, White, Margot, Todoric, Jelena, Tuttle, Robert, Wojnicz, Aneta, Sapp, Valerie, Vargas, Fernando, Yang, Jin, Zhang, Chao, Dorrestein, Pieter C.
Publié dans Anal Chem (2016)