Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data

Por Ahmad, Shandar, Mizuguchi, Kenji
Publicado em 2011

Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators

Por Murakami, Yoichi, Mizuguchi, Kenji
Publicado no BMC Bioinformatics (2014)

The diversity of H3 loops determines the antigen‐binding tendencies of antibody CDR loops

Por Tsuchiya, Yuko, Mizuguchi, Kenji
Publicado no Protein Sci (2016)

HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database

Por Stebbings, Lucy A., Mizuguchi, Kenji
Publicado em 2004

Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests

Por Nagao, Chioko, Nagano, Nozomi, Mizuguchi, Kenji
Publicado em 2014

Distinct protein interfaces in transmembrane domains suggest an in vivo folding model

Por Stevens, Timothy J., Mizuguchi, Kenji, Arkin, Isaiah T.
Publicado em 2004

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Por Chen, Yi-An, Tripathi, Lokesh P., Mizuguchi, Kenji
Publicado em 2011

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework

Por Chen, Yi-An, Tripathi, Lokesh P., Mizuguchi, Kenji
Publicado no Database (Oxford) (2016)

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

Por Andrabi, Munazah, Mizuguchi, Kenji, Sarai, Akinori, Ahmad, Shandar
Publicado em 2009

CCRXP: exploring clusters of conserved residues in protein structures

Por Ahmad, Shandar, Keskin, Ozlem, Mizuguchi, Kenji, Sarai, Akinori, Nussinov, Ruth
Publicado em 2010

A phylogenomic profile of hemerythrins, the nonheme diiron binding respiratory proteins

Por Bailly, Xavier, Vanin, Stefano, Chabasse, Christine, Mizuguchi, Kenji, Vinogradov, Serge N
Publicado em 2008

Functional site plasticity in domain superfamilies()

Por Dessailly, Benoit H., Dawson, Natalie L., Mizuguchi, Kenji, Orengo, Christine A.
Publicado em 2013

PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs

Por Ito, Jun-ichi, Ikeda, Kazuyoshi, Yamada, Kazunori, Mizuguchi, Kenji, Tomii, Kentaro
Publicado no Nucleic Acids Res (2014)

Ligand-induced Ordering of the C-terminal Tail Primes STING for Phosphorylation by TBK1

Por Tsuchiya, Yuko, Jounai, Nao, Takeshita, Fumihiko, Ishii, Ken J., Mizuguchi, Kenji
Publicado no EBioMedicine (2016)

Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type α-helical structure

Por Chen, Yi-An, Murakami, Yoichi, Ahmad, Shandar, Yoshimaru, Tetsuro, Katagiri, Toyomasa, Mizuguchi, Kenji
Publicado em 2014

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins

Por Ahmad, Shandar, Singh, Yumlembam Hemajit, Paudel, Yogesh, Mori, Takaharu, Sugita, Yuji, Mizuguchi, Kenji
Publicado em 2010

Prediction of dinucleotide-specific RNA-binding sites in proteins

Por Fernandez, Michael, Kumagai, Yutaro, Standley, Daron M, Sarai, Akinori, Mizuguchi, Kenji, Ahmad, Shandar
Publicado em 2011

Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data

Por Morita, Mizuki, Katta, AVSK Mohan, Ahmad, Shandar, Mori, Takaharu, Sugita, Yuji, Mizuguchi, Kenji
Publicado em 2011

Integrated Pathway Clusters with Coherent Biological Themes for Target Prioritisation

Por Chen, Yi-An, Tripathi, Lokesh P., Dessailly, Benoit H., Nyström-Persson, Johan, Ahmad, Shandar, Mizuguchi, Kenji
Publicado em 2014

Structure of the periplasmic domain of Pseudomonas aeruginosa TolA: evidence for an evolutionary relationship with the TonB transporter protein

Por Witty, Michael, Sanz, Carolina, Shah, Amish, Grossmann, J.Günter, Mizuguchi, Kenji, Perham, Richard N., Luisi, Ben
Publicado em 2002