Estimation of Gene Regulatory Networks

Por McCall, Matthew N
Publicado no Postdoc J (2013)

Affymetrix GeneChip microarray preprocessing for multivariate analyses

Por McCall, Matthew N, Almudevar, Anthony
Publicado em 2012

Consolidated strategy for the analysis of microarray spike-in data

Por McCall, Matthew N., Irizarry, Rafael A.
Publicado em 2008

Thawing Frozen Robust Multi-array Analysis (fRMA)

Por McCall, Matthew N, Irizarry, Rafael A
Publicado em 2011

Frozen robust multiarray analysis (fRMA)

Por McCall, Matthew N., Bolstad, Benjamin M., Irizarry, Rafael A.
Publicado em 2010

fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays

Por McCall, Matthew N., Jaffee, Harris A., Irizarry, Rafael A.
Publicado em 2012

Complex Sources of Variation in Tissue Expression Data: Analysis of the GTEx Lung Transcriptome

Por McCall, Matthew N., Illei, Peter B., Halushka, Marc K.
Publicado no Am J Hum Genet (2016)

Fitting Boolean Networks from Steady State Perturbation Data

Por Almudevar, Anthony, McCall, Matthew N, McMurray, Helene, Land, Hartmut
Publicado em 2011

On the underlying assumptions of threshold Boolean networks as a model for genetic regulatory network behavior

Por Tran, Van, McCall, Matthew N., McMurray, Helene R., Almudevar, Anthony
Publicado em 2013

On non-detects in qPCR data

Por McCall, Matthew N., McMurray, Helene R., Land, Hartmut, Almudevar, Anthony
Publicado em 2014

Performance evaluation of commercial miRNA expression array platforms

Por Sah, Sachin, McCall, Matthew N, Eveleigh, Deepa, Wilson, Michael, Irizarry, Rafael A
Publicado em 2010

Lessons from miR-143/145: the importance of cell-type localization of miRNAs

Por Kent, Oliver A., McCall, Matthew N., Cornish, Toby C., Halushka, Marc K.
Publicado em 2014

Assessing affymetrix GeneChip microarray quality

Por Lukk Margus, Murakami Peter N, McCall Matthew N, Huber Wolfgang, Irizarry Rafael A
Publicado em 2011-05-01

Assessing affymetrix GeneChip microarray quality

Por McCall, Matthew N, Murakami, Peter N, Lukk, Margus, Huber, Wolfgang, Irizarry, Rafael A
Publicado em 2011

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

Por McCall, Matthew N., Uppal, Karan, Jaffee, Harris A., Zilliox, Michael J., Irizarry, Rafael A.
Publicado em 2011

A microRNA biomarker of hepatocellular carcinoma recurrence following liver transplantation accounting for within-patient heterogeneity

Por Xie, Qing Yan, Almudevar, Anthony, Whitney-Miller, Christa L., Barry, Christopher T., McCall, Matthew N.
Publicado no BMC Med Genomics (2016)

MicroRNA profiling of diverse endothelial cell types

Por McCall, Matthew N, Kent, Oliver A, Yu, Jianshi, Fox-Talbot, Karen, Zaiman, Ari L, Halushka, Marc K
Publicado em 2011

A Critical Evaluation of microRNA Biomarkers in Non-Neoplastic Disease

Por Haider, Baqer A., Baras, Alexander S., McCall, Matthew N., Hertel, Joshua A., Cornish, Toby C., Halushka, Marc K.
Publicado em 2014

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data

Por Wu, George, Yustein, Jason T., McCall, Matthew N., Zilliox, Michael, Irizarry, Rafael A., Zeller, Karen, Dang, Chi V., Ji, Hongkai
Publicado em 2013

The Gene Expression Barcode 3.0: improved data processing and mining tools

Por McCall, Matthew N., Jaffee, Harris A., Zelisko, Susan J., Sinha, Neeraj, Hooiveld, Guido, Irizarry, Rafael A., Zilliox, Michael J.
Publicado em 2014