SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations

по Guilhamon, Paul, Lupien, Mathieu
Опубликовано в: BMC Bioinformatics (2018)

Laying a solid foundation for Manhattan ‘Setting the functional basis for the post-GWAS era’

по Zhang, Xiaoyang, Bailey, Swneke D., Lupien, Mathieu
Опубликовано 2014

Emergence of the noncoding cancer genome: a target of genetic and epigenetic alterations

по Zhou, Stanley, Treloar, Aislinn E., Lupien, Mathieu
Опубликовано в: Cancer Discov (2016)

Enhancer alterations in cancer: a source for a cell identity crisis

по Kron, Ken J, Bailey, Swneke D, Lupien, Mathieu
Опубликовано в: Genome Med (2014)

PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer

по Magnani, Luca, Ballantyne, Elizabeth B., Zhang, Xiaoyang, Lupien, Mathieu
Опубликовано 2011

Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

по Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin, Lupien, Mathieu
Опубликовано в: Nat Commun (2021)

Cancer heterogeneity: origins and implications for genetic association studies

по Urbach, Davnah, Lupien, Mathieu, Karagas, Margaret R., Moore, Jason H.
Опубликовано 2012

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments

по Bailey, Swneke D., Virtanen, Carl, Haibe-Kains, Benjamin, Lupien, Mathieu
Опубликовано в: Bioinformatics (2015)

Genomic Collaboration of Estrogen Receptor α and Extracellular Signal-Regulated Kinase 2 in Regulating Gene and Proliferation Programs

по Madak-Erdogan, Zeynep, Lupien, Mathieu, Stossi, Fabio, Brown, Myles, Katzenellenbogen, Benita S.
Опубликовано 2011

Pioneer of prostate cancer: past, present and the future of FOXA1

по Teng, Mona, Zhou, Stanley, Cai, Changmeng, Lupien, Mathieu, He, Housheng Hansen
Опубликовано в: Protein Cell (2020)

Overexpression of Activated Murine Notch1 and Notch3 in Transgenic Mice Blocks Mammary Gland Development and Induces Mammary Tumors

по Hu, Chunyan, Diévart, Anne, Lupien, Mathieu, Calvo, Ezequiel, Tremblay, Gilles, Jolicoeur, Paul
Опубликовано 2006

Exploiting tumor epigenetics to improve oncolytic virotherapy

по Forbes, Nicole E., Abdelbary, Hesham, Lupien, Mathieu, Bell, John C., Diallo, Jean-Simon
Опубликовано 2013

A global assessment of cancer genomic alterations in epigenetic mechanisms

по Shah, Muhammad A, Denton, Emily L, Arrowsmith, Cheryl H, Lupien, Mathieu, Schapira, Matthieu
Опубликовано в: Epigenetics Chromatin (2014)

Organizing combinatorial transcription factor recruitment at cis-regulatory modules

по Dubois-Chevalier, Julie, Mazrooei, Parisa, Lupien, Mathieu, Staels, Bart, Lefebvre, Philippe, Eeckhoute, Jérôme
Опубликовано в: Transcription (2017)

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

по Madani Tonekaboni, Seyed Ali, Mazrooei, Parisa, Kofia, Victor, Haibe-Kains, Benjamin, Lupien, Mathieu
Опубликовано в: Genome Res (2019)

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

по Zhang, Xiaoyang, Cowper-Sal·lari, Richard, Bailey, Swneke D., Moore, Jason H., Lupien, Mathieu
Опубликовано 2012

The histone variant H2A.Z is an important regulator of enhancer activity

по Brunelle, Mylène, Nordell Markovits, Alexei, Rodrigue, Sébastien, Lupien, Mathieu, Jacques, Pierre-Étienne, Gévry, Nicolas
Опубликовано в: Nucleic Acids Res (2015)

Unique ERα Cistromes Control Cell Type-Specific Gene Regulation

по Krum, Susan A., Miranda-Carboni, Gustavo A., Lupien, Mathieu, Eeckhoute, Jerome, Carroll, Jason S., Brown, Myles
Опубликовано 2008

Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

по Cowper-Sal·lari, Richard, Cole, Michael D., Karagas, Margaret R., Lupien, Mathieu, Moore, Jason H.
Опубликовано 2010

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions

по Ahmed, Musaddeque, Sallari, Richard C., Guo, Haiyang, Moore, Jason H., He, Housheng Hansen, Lupien, Mathieu
Опубликовано в: BioData Min (2017)