SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations

Tekijä Guilhamon, Paul, Lupien, Mathieu
Julkaisussa BMC Bioinformatics (2018)

Laying a solid foundation for Manhattan ‘Setting the functional basis for the post-GWAS era’

Tekijä Zhang, Xiaoyang, Bailey, Swneke D., Lupien, Mathieu
Julkaistu 2014

Emergence of the noncoding cancer genome: a target of genetic and epigenetic alterations

Tekijä Zhou, Stanley, Treloar, Aislinn E., Lupien, Mathieu
Julkaisussa Cancer Discov (2016)

Enhancer alterations in cancer: a source for a cell identity crisis

Tekijä Kron, Ken J, Bailey, Swneke D, Lupien, Mathieu
Julkaisussa Genome Med (2014)

PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer

Tekijä Magnani, Luca, Ballantyne, Elizabeth B., Zhang, Xiaoyang, Lupien, Mathieu
Julkaistu 2011

Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

Tekijä Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin, Lupien, Mathieu
Julkaisussa Nat Commun (2021)

Cancer heterogeneity: origins and implications for genetic association studies

Tekijä Urbach, Davnah, Lupien, Mathieu, Karagas, Margaret R., Moore, Jason H.
Julkaistu 2012

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments

Tekijä Bailey, Swneke D., Virtanen, Carl, Haibe-Kains, Benjamin, Lupien, Mathieu
Julkaisussa Bioinformatics (2015)

Genomic Collaboration of Estrogen Receptor α and Extracellular Signal-Regulated Kinase 2 in Regulating Gene and Proliferation Programs

Tekijä Madak-Erdogan, Zeynep, Lupien, Mathieu, Stossi, Fabio, Brown, Myles, Katzenellenbogen, Benita S.
Julkaistu 2011

Pioneer of prostate cancer: past, present and the future of FOXA1

Tekijä Teng, Mona, Zhou, Stanley, Cai, Changmeng, Lupien, Mathieu, He, Housheng Hansen
Julkaisussa Protein Cell (2020)

Overexpression of Activated Murine Notch1 and Notch3 in Transgenic Mice Blocks Mammary Gland Development and Induces Mammary Tumors

Tekijä Hu, Chunyan, Diévart, Anne, Lupien, Mathieu, Calvo, Ezequiel, Tremblay, Gilles, Jolicoeur, Paul
Julkaistu 2006

Exploiting tumor epigenetics to improve oncolytic virotherapy

Tekijä Forbes, Nicole E., Abdelbary, Hesham, Lupien, Mathieu, Bell, John C., Diallo, Jean-Simon
Julkaistu 2013

A global assessment of cancer genomic alterations in epigenetic mechanisms

Tekijä Shah, Muhammad A, Denton, Emily L, Arrowsmith, Cheryl H, Lupien, Mathieu, Schapira, Matthieu
Julkaisussa Epigenetics Chromatin (2014)

Organizing combinatorial transcription factor recruitment at cis-regulatory modules

Tekijä Dubois-Chevalier, Julie, Mazrooei, Parisa, Lupien, Mathieu, Staels, Bart, Lefebvre, Philippe, Eeckhoute, Jérôme
Julkaisussa Transcription (2017)

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

Tekijä Madani Tonekaboni, Seyed Ali, Mazrooei, Parisa, Kofia, Victor, Haibe-Kains, Benjamin, Lupien, Mathieu
Julkaisussa Genome Res (2019)

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

Tekijä Zhang, Xiaoyang, Cowper-Sal·lari, Richard, Bailey, Swneke D., Moore, Jason H., Lupien, Mathieu
Julkaistu 2012

The histone variant H2A.Z is an important regulator of enhancer activity

Tekijä Brunelle, Mylène, Nordell Markovits, Alexei, Rodrigue, Sébastien, Lupien, Mathieu, Jacques, Pierre-Étienne, Gévry, Nicolas
Julkaisussa Nucleic Acids Res (2015)

Unique ERα Cistromes Control Cell Type-Specific Gene Regulation

Tekijä Krum, Susan A., Miranda-Carboni, Gustavo A., Lupien, Mathieu, Eeckhoute, Jerome, Carroll, Jason S., Brown, Myles
Julkaistu 2008

Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

Tekijä Cowper-Sal·lari, Richard, Cole, Michael D., Karagas, Margaret R., Lupien, Mathieu, Moore, Jason H.
Julkaistu 2010

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions

Tekijä Ahmed, Musaddeque, Sallari, Richard C., Guo, Haiyang, Moore, Jason H., He, Housheng Hansen, Lupien, Mathieu
Julkaisussa BioData Min (2017)