SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations

por Guilhamon, Paul, Lupien, Mathieu
Publicado en BMC Bioinformatics (2018)

Laying a solid foundation for Manhattan ‘Setting the functional basis for the post-GWAS era’

por Zhang, Xiaoyang, Bailey, Swneke D., Lupien, Mathieu
Publicado 2014

Emergence of the noncoding cancer genome: a target of genetic and epigenetic alterations

por Zhou, Stanley, Treloar, Aislinn E., Lupien, Mathieu
Publicado en Cancer Discov (2016)

Enhancer alterations in cancer: a source for a cell identity crisis

por Kron, Ken J, Bailey, Swneke D, Lupien, Mathieu
Publicado en Genome Med (2014)

PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer

por Magnani, Luca, Ballantyne, Elizabeth B., Zhang, Xiaoyang, Lupien, Mathieu
Publicado 2011

Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

por Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicado en Nat Commun (2021)

Cancer heterogeneity: origins and implications for genetic association studies

por Urbach, Davnah, Lupien, Mathieu, Karagas, Margaret R., Moore, Jason H.
Publicado 2012

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments

por Bailey, Swneke D., Virtanen, Carl, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicado en Bioinformatics (2015)

Genomic Collaboration of Estrogen Receptor α and Extracellular Signal-Regulated Kinase 2 in Regulating Gene and Proliferation Programs

por Madak-Erdogan, Zeynep, Lupien, Mathieu, Stossi, Fabio, Brown, Myles, Katzenellenbogen, Benita S.
Publicado 2011

Pioneer of prostate cancer: past, present and the future of FOXA1

por Teng, Mona, Zhou, Stanley, Cai, Changmeng, Lupien, Mathieu, He, Housheng Hansen
Publicado en Protein Cell (2020)

Overexpression of Activated Murine Notch1 and Notch3 in Transgenic Mice Blocks Mammary Gland Development and Induces Mammary Tumors

por Hu, Chunyan, Diévart, Anne, Lupien, Mathieu, Calvo, Ezequiel, Tremblay, Gilles, Jolicoeur, Paul
Publicado 2006

Exploiting tumor epigenetics to improve oncolytic virotherapy

por Forbes, Nicole E., Abdelbary, Hesham, Lupien, Mathieu, Bell, John C., Diallo, Jean-Simon
Publicado 2013

A global assessment of cancer genomic alterations in epigenetic mechanisms

por Shah, Muhammad A, Denton, Emily L, Arrowsmith, Cheryl H, Lupien, Mathieu, Schapira, Matthieu
Publicado en Epigenetics Chromatin (2014)

Organizing combinatorial transcription factor recruitment at cis-regulatory modules

por Dubois-Chevalier, Julie, Mazrooei, Parisa, Lupien, Mathieu, Staels, Bart, Lefebvre, Philippe, Eeckhoute, Jérôme
Publicado en Transcription (2017)

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

por Madani Tonekaboni, Seyed Ali, Mazrooei, Parisa, Kofia, Victor, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicado en Genome Res (2019)

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

por Zhang, Xiaoyang, Cowper-Sal·lari, Richard, Bailey, Swneke D., Moore, Jason H., Lupien, Mathieu
Publicado 2012

The histone variant H2A.Z is an important regulator of enhancer activity

por Brunelle, Mylène, Nordell Markovits, Alexei, Rodrigue, Sébastien, Lupien, Mathieu, Jacques, Pierre-Étienne, Gévry, Nicolas
Publicado en Nucleic Acids Res (2015)

Unique ERα Cistromes Control Cell Type-Specific Gene Regulation

por Krum, Susan A., Miranda-Carboni, Gustavo A., Lupien, Mathieu, Eeckhoute, Jerome, Carroll, Jason S., Brown, Myles
Publicado 2008

Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

por Cowper-Sal·lari, Richard, Cole, Michael D., Karagas, Margaret R., Lupien, Mathieu, Moore, Jason H.
Publicado 2010

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions

por Ahmed, Musaddeque, Sallari, Richard C., Guo, Haiyang, Moore, Jason H., He, Housheng Hansen, Lupien, Mathieu
Publicado en BioData Min (2017)