SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations

per Guilhamon, Paul, Lupien, Mathieu
Publicat a BMC Bioinformatics (2018)

Laying a solid foundation for Manhattan ‘Setting the functional basis for the post-GWAS era’

per Zhang, Xiaoyang, Bailey, Swneke D., Lupien, Mathieu
Publicat 2014

Emergence of the noncoding cancer genome: a target of genetic and epigenetic alterations

per Zhou, Stanley, Treloar, Aislinn E., Lupien, Mathieu
Publicat a Cancer Discov (2016)

Enhancer alterations in cancer: a source for a cell identity crisis

per Kron, Ken J, Bailey, Swneke D, Lupien, Mathieu
Publicat a Genome Med (2014)

PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer

per Magnani, Luca, Ballantyne, Elizabeth B., Zhang, Xiaoyang, Lupien, Mathieu
Publicat 2011

Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

per Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicat a Nat Commun (2021)

Cancer heterogeneity: origins and implications for genetic association studies

per Urbach, Davnah, Lupien, Mathieu, Karagas, Margaret R., Moore, Jason H.
Publicat 2012

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments

per Bailey, Swneke D., Virtanen, Carl, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicat a Bioinformatics (2015)

Genomic Collaboration of Estrogen Receptor α and Extracellular Signal-Regulated Kinase 2 in Regulating Gene and Proliferation Programs

per Madak-Erdogan, Zeynep, Lupien, Mathieu, Stossi, Fabio, Brown, Myles, Katzenellenbogen, Benita S.
Publicat 2011

Pioneer of prostate cancer: past, present and the future of FOXA1

per Teng, Mona, Zhou, Stanley, Cai, Changmeng, Lupien, Mathieu, He, Housheng Hansen
Publicat a Protein Cell (2020)

Overexpression of Activated Murine Notch1 and Notch3 in Transgenic Mice Blocks Mammary Gland Development and Induces Mammary Tumors

per Hu, Chunyan, Diévart, Anne, Lupien, Mathieu, Calvo, Ezequiel, Tremblay, Gilles, Jolicoeur, Paul
Publicat 2006

Exploiting tumor epigenetics to improve oncolytic virotherapy

per Forbes, Nicole E., Abdelbary, Hesham, Lupien, Mathieu, Bell, John C., Diallo, Jean-Simon
Publicat 2013

A global assessment of cancer genomic alterations in epigenetic mechanisms

per Shah, Muhammad A, Denton, Emily L, Arrowsmith, Cheryl H, Lupien, Mathieu, Schapira, Matthieu
Publicat a Epigenetics Chromatin (2014)

Organizing combinatorial transcription factor recruitment at cis-regulatory modules

per Dubois-Chevalier, Julie, Mazrooei, Parisa, Lupien, Mathieu, Staels, Bart, Lefebvre, Philippe, Eeckhoute, Jérôme
Publicat a Transcription (2017)

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

per Madani Tonekaboni, Seyed Ali, Mazrooei, Parisa, Kofia, Victor, Haibe-Kains, Benjamin, Lupien, Mathieu
Publicat a Genome Res (2019)

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

per Zhang, Xiaoyang, Cowper-Sal·lari, Richard, Bailey, Swneke D., Moore, Jason H., Lupien, Mathieu
Publicat 2012

The histone variant H2A.Z is an important regulator of enhancer activity

per Brunelle, Mylène, Nordell Markovits, Alexei, Rodrigue, Sébastien, Lupien, Mathieu, Jacques, Pierre-Étienne, Gévry, Nicolas
Publicat a Nucleic Acids Res (2015)

Unique ERα Cistromes Control Cell Type-Specific Gene Regulation

per Krum, Susan A., Miranda-Carboni, Gustavo A., Lupien, Mathieu, Eeckhoute, Jerome, Carroll, Jason S., Brown, Myles
Publicat 2008

Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

per Cowper-Sal·lari, Richard, Cole, Michael D., Karagas, Margaret R., Lupien, Mathieu, Moore, Jason H.
Publicat 2010

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions

per Ahmed, Musaddeque, Sallari, Richard C., Guo, Haiyang, Moore, Jason H., He, Housheng Hansen, Lupien, Mathieu
Publicat a BioData Min (2017)