Investigating reproducibility and tracking provenance – A genomic workflow case study

Por Kanwal, Sehrish, Khan, Farah Zaib, Lonie, Andrew, Sinnott, Richard O.
Publicado no BMC Bioinformatics (2017)

iSRAP – a one-touch research tool for rapid profiling of small RNA-seq data

Por Quek, Camelia, Jung, Chol-hee, Bellingham, Shayne A., Lonie, Andrew, Hill, Andrew F.
Publicado no J Extracell Vesicles (2015)

Pipeline for the identification and classification of ion channels in parasitic flatworms

Por Nor, Bahiyah, Young, Neil D., Korhonen, Pasi K., Hall, Ross S., Tan, Patrick, Lonie, Andrew, Gasser, Robin B.
Publicado no Parasit Vectors (2016)

Identification of G protein-coupled receptors in Schistosoma haematobium and S. mansoni by comparative genomics

Por Campos, Tulio D L, Young, Neil D, Korhonen, Pasi K, Hall, Ross S, Mangiola, Stefano, Lonie, Andrew, Gasser, Robin B
Publicado em 2014

Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud

Por Afgan, Enis, Sloggett, Clare, Goonasekera, Nuwan, Makunin, Igor, Benson, Derek, Crowe, Mark, Gladman, Simon, Kowsar, Yousef, Pheasant, Michael, Horst, Ron, Lonie, Andrew
Publicado no PLoS One (2015)

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets

Por Pope, Bernard J, Nguyen-Dumont, Tú, Odefrey, Fabrice, Hammet, Fleur, Bell, Russell, Tao, Kayoko, Tavtigian, Sean V, Goldgar, David E, Lonie, Andrew, Southey, Melissa C, Park, Daniel J
Publicado em 2013

Cpipe: a shared variant detection pipeline designed for diagnostic settings

Por Sadedin, Simon P., Dashnow, Harriet, James, Paul A., Bahlo, Melanie, Bauer, Denis C., Lonie, Andrew, Lunke, Sebastian, Macciocca, Ivan, Ross, Jason P., Siemering, Kirby R., Stark, Zornitza, White, Susan M., Taylor, Graham, Gaff, Clara, Oshlack, Alicia, Thorne, Natalie P.
Publicado no Genome Med (2015)

Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case–control study

Por Dugué, Pierre-Antoine, Brinkman, Maree T, Milne, Roger L, Wong, Ee Ming, FitzGerald, Liesel M, Bassett, Julie K, Joo, Jihoon E, Jung, Chol-Hee, Makalic, Enes, Schmidt, Daniel F, Park, Daniel J, Chung, Jessica, Ta, Anthony D, Bolton, Damien M, Lonie, Andrew, Longano, Anthony, Hopper, John L, Severi, Gianluca, Saffery, Richard, English, Dallas R, Southey, Melissa C, Giles, Graham G
Publicado no Br J Cancer (2016)

Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer

Por Hong, Matthew K.H., Macintyre, Geoff, Wedge, David C., Van Loo, Peter, Patel, Keval, Lunke, Sebastian, Alexandrov, Ludmil B., Sloggett, Clare, Cmero, Marek, Marass, Francesco, Tsui, Dana, Mangiola, Stefano, Lonie, Andrew, Naeem, Haroon, Sapre, Nikhil, Phal, Pramit M., Kurganovs, Natalie, Chin, Xiaowen, Kerger, Michael, Warren, Anne Y., Neal, David, Gnanapragasam, Vincent, Rosenfeld, Nitzan, Pedersen, John S., Ryan, Andrew, Haviv, Izhak, Costello, Anthony J., Corcoran, Niall M., Hovens, Christopher M.
Publicado no Nat Commun (2015)

Rare mutations in RINT1 predispose carriers to breast and Lynch Syndrome-spectrum cancers

Por Park, Daniel J., Tao, Kayoko, Le Calvez-Kelm, Florence, Nguyen-Dumont, Tu, Robinot, Nivonirina, Hammet, Fleur, Odefrey, Fabrice, Tsimiklis, Helen, Teo, Zhi L., Thingholm, Louise B., Young, Erin L., Voegele, Catherine, Lonie, Andrew, Pope, Bernard J., Roane, Terrell C., Bell, Russell, Hu, Hao, Shankaracharya, Huff, Chad D., Ellis, Jonathan, Li, Jun, Makunin, Igor V., John, Esther M., Andrulis, Irene L., Terry, Mary B., Daly, Mary, Buys, Saundra S., Snyder, Carrie, Lynch, Henry T., Devilee, Peter, Giles, Graham G., Hopper, John L., Feng, Bing J., Lesueur, Fabienne, Tavtigian, Sean V., Southey, Melissa C., Goldgar, David E.
Publicado no Cancer Discov (2014)