The rules and impact of nonsense-mediated mRNA decay in human cancers

od Lindeboom, Rik G.H., Supek, Fran, Lehner, Ben
Wydane w Nat Genet (2016)

The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy

od Lindeboom, Rik G.H., Vermeulen, Michiel, Lehner, Ben, Supek, Fran
Wydane w Nat Genet (2019)

Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs

od Smits, Arne H., Lindeboom, Rik G.H., Perino, Matteo, van Heeringen, Simon J., Veenstra, Gert Jan C., Vermeulen, Michiel
Wydane 2014

Proteomic landscape of the primary somatosensory cortex upon sensory deprivation

od Kole, Koen, Lindeboom, Rik G.H., Baltissen, Marijke P.A., Jansen, Pascal W.T.C., Vermeulen, Michiel, Tiesinga, Paul, Celikel, Tansu
Wydane w Gigascience (2017)

Erratum to: Proteomic landscape of the primary somatosensory cortex upon sensory deprivation

od Kole, Koen, Lindeboom, Rik G H, Baltissen, Marijke P A, Jansen, Pascal W T C, Vermeulen, Michiel, Tiesinga, Paul, Celikel, Tansu
Wydane w Gigascience (2018)

Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay

od Hoek, Tim A., Khuperkar, Deepak, Lindeboom, Rik G.H., Sonneveld, Stijn, Verhagen, Bram M.P., Boersma, Sanne, Vermeulen, Michiel, Tanenbaum, Marvin E.
Wydane w Mol Cell (2019)

NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells

od Kloet, Susan L., Karemaker, Ino D., van Voorthuijsen, Lisa, Lindeboom, Rik G. H., Baltissen, Marijke P., Edupuganti, Raghu R., Poramba-Liyanage, Deepani W., Jansen, Pascal W. T. C., Vermeulen, Michiel
Wydane w Nat Commun (2018)

Integrative multi‐omics analysis of intestinal organoid differentiation

od Lindeboom, Rik GH, van Voorthuijsen, Lisa, Oost, Koen C, Rodríguez‐Colman, Maria J, Luna‐Velez, Maria V, Furlan, Cristina, Baraille, Floriane, Jansen, Pascal WTC, Ribeiro, Agnès, Burgering, Boudewijn MT, Snippert, Hugo J, Vermeulen, Michiel
Wydane w Mol Syst Biol (2018)

N(6)-methyladenosine (m(6)A) recruits and repels proteins to regulate mRNA homeostasis

od Edupuganti, Raghu R, Geiger, Simon, Lindeboom, Rik G H, Shi, Hailing, Hsu, Phillip J, Lu, Zhike, Wang, Shuang-Yin, Baltissen, Marijke P A, Jansen, Pascal W T C, Rossa, Martin, Müller, Markus, Stunnenberg, Hendrik G, He, Chuan, Carell, Thomas, Vermeulen, Michiel
Wydane w Nat Struct Mol Biol (2017)

Specific Labeling of Stem Cell Activity in Human Colorectal Organoids Using an ASCL2-Responsive Minigene

od Oost, Koen C., van Voorthuijsen, Lisa, Fumagalli, Arianna, Lindeboom, Rik G.H., Sprangers, Joep, Omerzu, Manja, Rodriguez-Colman, Maria J., Heinz, Maria C., Verlaan-Klink, Ingrid, Maurice, Madelon M., Burgering, Boudewijn M.T., van Rheenen, Jacco, Vermeulen, Michiel, Snippert, Hugo J.G.
Wydane w Cell Rep (2018)

RNF43 truncations trap CK1 to drive niche‐independent self‐renewal in cancer

od Spit, Maureen, Fenderico, Nicola, Jordens, Ingrid, Radaszkiewicz, Tomasz, Lindeboom, Rik GH, Bugter, Jeroen M, Cristobal, Alba, Ootes, Lars, van Osch, Max, Janssen, Eline, Boonekamp, Kim E, Hanakova, Katerina, Potesil, David, Zdrahal, Zbynek, Boj, Sylvia F, Medema, Jan Paul, Bryja, Vitezslav, Koo, Bon‐Kyoung, Vermeulen, Michiel, Maurice, Madelon M
Wydane w EMBO J (2020)

Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131

od Varier, Radhika A., de Santa Pau, Enrique Carrillo, van der Groep, Petra, Lindeboom, Rik G. H., Matarese, Filomena, Mensinga, Anneloes, Smits, Arne H., Edupuganti, Raghu Ram, Baltissen, Marijke P., Jansen, Pascal W. T. C., ter Hoeve, Natalie, van Weely, Danny R., Poser, Ina, van Diest, Paul J., Stunnenberg, Hendrik G., Vermeulen, Michiel
Wydane w J Biol Chem (2016)

Hydroxychloroquine Inhibits the Trained Innate Immune Response to Interferons

od Rother, Nils, Yanginlar, Cansu, Lindeboom, Rik G.H., Bekkering, Siroon, van Leent, Mandy M.T., Buijsers, Baranca, Jonkman, Inge, de Graaf, Mark, Baltissen, Marijke, Lamers, Lieke A., Riksen, Niels P., Fayad, Zahi A., Mulder, Willem J.M., Hilbrands, Luuk B., Joosten, Leo A.B., Netea, Mihai G., Vermeulen, Michiel, van der Vlag, Johan, Duivenvoorden, Raphaël
Wydane w Cell Rep Med (2020)

Multi-omics profiling reveals a distinctive epigenome signature for high-risk acute promyelocytic leukemia

od Singh, Abhishek A., Petraglia, Francesca, Nebbioso, Angela, Yi, Guoqiang, Conte, Mariarosaria, Valente, Sergio, Mandoli, Amit, Scisciola, Lucia, Lindeboom, Rik, Kerstens, Hinri, Janssen-Megens, Eva M., Pourfarzad, Farzin, Habibi, Ehsan, Berentsen, Kim, Kim, Bowon, Logie, Colin, Heath, Simon, Wierenga, Albertus T.J., Clarke, Laura, Flicek, Paul, Jansen, Joop H., Kuijpers, Taco, Yaspo, Marie Laure, Valle, Veronique Della, Bernard, Olivier, Gut, Ivo, Vellenga, Edo, Stunnenberg, Hendrik G., Mai, Antonello, Altucci, Lucia, Martens, Joost H.A.
Wydane w Oncotarget (2018)

Early human lung immune cell development and its role in epithelial cell fate

od Barnes, Josephine L., Yoshida, Masahiro, He, Peng, Worlock, Kaylee B., Lindeboom, Rik G.H., Suo, Chenqu, Pett, J. Patrick, Wilbrey-Clark, Anna, Dann, Emma, Mamanova, Lira, Richardson, Laura, Polanski, Krzysztof, Pennycuick, Adam, Allen-Hyttinen, Jessica, Herczeg, Iván T., Arzili, Romina, Hynds, Robert E., Teixeira, Vitor H., Haniffa, Muzlifah, Lim, Kyungtae, Sun, Dawei, Rawlins, Emma L., Oliver, Amanda J., Lyons, Paul A., Marioni, John C., Ruhrberg, Christiana, Tuong, Zewen Kelvin, Clatworthy, Menna R., Reading, James L., Janes, Sam M., Teichmann, Sarah A., Meyer, Kerstin B., Nikolić, Marko Z.
Wydane w Sci Immunol (2023)

Single-cell multi-omics analysis of the immune response in COVID-19

od Stephenson, Emily, Reynolds, Gary, Botting, Rachel A., Calero-Nieto, Fernando J., Morgan, Michael D., Tuong, Zewen Kelvin, Bach, Karsten, Sungnak, Waradon, Worlock, Kaylee B., Yoshida, Masahiro, Kumasaka, Natsuhiko, Kania, Katarzyna, Engelbert, Justin, Olabi, Bayanne, Spegarova, Jarmila Stremenova, Wilson, Nicola K., Mende, Nicole, Jardine, Laura, Gardner, Louis C. S., Goh, Issac, Horsfall, Dave, McGrath, Jim, Webb, Simone, Mather, Michael W., Lindeboom, Rik G. H., Dann, Emma, Huang, Ni, Polanski, Krzysztof, Prigmore, Elena, Gothe, Florian, Scott, Jonathan, Payne, Rebecca P., Baker, Kenneth F., Hanrath, Aidan T., Schim van der Loeff, Ina C. D., Barr, Andrew S., Sanchez-Gonzalez, Amada, Bergamaschi, Laura, Mescia, Federica, Barnes, Josephine L., Kilich, Eliz, de Wilton, Angus, Saigal, Anita, Saleh, Aarash, Janes, Sam M., Smith, Claire M., Gopee, Nusayhah, Wilson, Caroline, Coupland, Paul, Coxhead, Jonathan M., Kiselev, Vladimir Yu, van Dongen, Stijn, Bacardit, Jaume, King, Hamish W., Rostron, Anthony J., Simpson, A. John, Hambleton, Sophie, Laurenti, Elisa, Lyons, Paul A., Meyer, Kerstin B., Nikolić, Marko Z., Duncan, Christopher J. A., Smith, Kenneth G. C., Teichmann, Sarah A., Clatworthy, Menna R., Marioni, John C., Göttgens, Berthold, Haniffa, Muzlifah
Wydane w Nat Med (2021)