Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy

door Joseph, Agnel Praveen, Lagerstedt, Ingvar, Patwardhan, Ardan, Topf, Maya, Winn, Martyn
Gepubliceerd in J Struct Biol (2017)

Web-based volume slicer for 3D electron-microscopy data from EMDB

door Salavert-Torres, José, Iudin, Andrii, Lagerstedt, Ingvar, Sanz-García, Eduardo, Kleywegt, Gerard J., Patwardhan, Ardan
Gepubliceerd in J Struct Biol (2016)

Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps

door Joseph, Agnel Praveen, Lagerstedt, Ingvar, Jakobi, Arjen, Burnley, Tom, Patwardhan, Ardan, Topf, Maya, Winn, Martyn
Gepubliceerd in J Chem Inf Model (2020)

Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB()

door Lagerstedt, Ingvar, Moore, William J., Patwardhan, Ardan, Sanz-García, Eduardo, Best, Christoph, Swedlow, Jason R., Kleywegt, Gerard J.
Gepubliceerd in 2013

EMDataBank unified data resource for 3DEM

door Lawson, Catherine L., Patwardhan, Ardan, Baker, Matthew L., Hryc, Corey, Garcia, Eduardo Sanz, Hudson, Brian P., Lagerstedt, Ingvar, Ludtke, Steven J., Pintilie, Grigore, Sala, Raul, Westbrook, John D., Berman, Helen M., Kleywegt, Gerard J., Chiu, Wah
Gepubliceerd in Nucleic Acids Res (2016)

EMDataBank.org: unified data resource for CryoEM

door Lawson, Catherine L., Baker, Matthew L., Best, Christoph, Bi, Chunxiao, Dougherty, Matthew, Feng, Powei, van Ginkel, Glen, Devkota, Batsal, Lagerstedt, Ingvar, Ludtke, Steven J., Newman, Richard H., Oldfield, Tom J., Rees, Ian, Sahni, Gaurav, Sala, Raul, Velankar, Sameer, Warren, Joe, Westbrook, John D., Henrick, Kim, Kleywegt, Gerard J., Berman, Helen M., Chiu, Wah
Gepubliceerd in 2011

OME Remote Objects (OMERO): a flexible, model-driven data management system for experimental biology

door Allan, Chris, Burel, Jean-Marie, Moore, Josh, Blackburn, Colin, Linkert, Melissa, Loynton, Scott, MacDonald, Donald, Moore, William J., Neves, Carlos, Patterson, Andrew, Porter, Michael, Tarkowska, Aleksandra, Loranger, Brian, Avondo, Jerome, Lagerstedt, Ingvar, Lianas, Luca, Leo, Simone, Hands, Katherine, Hay, Ron T., Patwardhan, Ardan, Best, Christoph, Kleywegt, Gerard J., Zanetti, Gianluigi, Swedlow, Jason R.
Gepubliceerd in 2012

A 3D cellular context for the macromolecular world

door Patwardhan, Ardan, Ashton, Alun, Brandt, Robert, Butcher, Sarah, Carzaniga, Raffaella, Chiu, Wah, Collinson, Lucy, Doux, Pascal, Duke, Elizabeth, Ellisman, Mark H, Franken, Erik, Grünewald, Kay, Heriche, Jean-Karim, Koster, Abraham, Kühlbrandt, Werner, Lagerstedt, Ingvar, Larabell, Carolyn, Lawson, Catherine L, Saibil, Helen R, Sanz-García, Eduardo, Subramaniam, Sriram, Verkade, Paul, Swedlow, Jason R, Kleywegt, Gerard J
Gepubliceerd in Nat Struct Mol Biol (2014)

Data management challenges in three-dimensional EM

door Patwardhan, Ardan, Carazo, José-Maria, Carragher, Bridget, Henderson, Richard, Heymann, J Bernard, Hill, Emma, Jensen, Grant J, Lagerstedt, Ingvar, Lawson, Catherine L, Ludtke, Steven J, Mastronarde, David, Moore, William J, Roseman, Alan, Rosenthal, Peter, Sorzano, Carlos-Oscar S, Sanz-García, Eduardo, Scheres, Sjors H W, Subramaniam, Sriram, Westbrook, John, Winn, Martyn, Swedlow, Jason R, Kleywegt, Gerard J
Gepubliceerd in 2012

Building bridges between cellular and molecular structural biology

door Patwardhan, Ardan, Brandt, Robert, Butcher, Sarah J, Collinson, Lucy, Gault, David, Grünewald, Kay, Hecksel, Corey, Huiskonen, Juha T, Iudin, Andrii, Jones, Martin L, Korir, Paul K, Koster, Abraham J, Lagerstedt, Ingvar, Lawson, Catherine L, Mastronarde, David, McCormick, Matthew, Parkinson, Helen, Rosenthal, Peter B, Saalfeld, Stephan, Saibil, Helen R, Sarntivijai, Sirarat, Solanes Valero, Irene, Subramaniam, Sriram, Swedlow, Jason R, Tudose, Ilinca, Winn, Martyn, Kleywegt, Gerard J
Gepubliceerd in eLife (2017)

PDBe: Protein Data Bank in Europe

door Gutmanas, Aleksandras, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Bochet, Estelle, Conroy, Matthew J., Dana, Jose M., Fernandez Montecelo, Manuel A., van Ginkel, Glen, Gore, Swanand P., Haslam, Pauline, Hatherley, Rowan, Hendrickx, Pieter M.S., Hirshberg, Miriam, Lagerstedt, Ingvar, Mir, Saqib, Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Rinaldi, Luana, Sahni, Gaurav, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Velankar, Sameer, Wainwright, Michael E., Kleywegt, Gerard J.
Gepubliceerd in 2014

PDBe: Protein Data Bank in Europe

door Velankar, Sameer, Alhroub, Younes, Alili, Anaëlle, Best, Christoph, Boutselakis, Harry C., Caboche, Ségolène, Conroy, Matthew J., Dana, Jose M., van Ginkel, Glen, Golovin, Adel, Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hirshberg, Miriam, John, Melford, Lagerstedt, Ingvar, Mir, Saqib, Newman, Laurence E., Oldfield, Tom J., Penkett, Chris J., Pineda-Castillo, Jorge, Rinaldi, Luana, Sahni, Gaurav, Sawka, Grégoire, Sen, Sanchayita, Slowley, Robert, Sousa da Silva, Alan Wilter, Suarez-Uruena, Antonio, Swaminathan, G. Jawahar, Symmons, Martyn F., Vranken, Wim F., Wainwright, Michael, Kleywegt, Gerard J.
Gepubliceerd in 2011

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

door Velankar, Sameer, van Ginkel, Glen, Alhroub, Younes, Battle, Gary M., Berrisford, John M., Conroy, Matthew J., Dana, Jose M., Gore, Swanand P., Gutmanas, Aleksandras, Haslam, Pauline, Hendrickx, Pieter M. S., Lagerstedt, Ingvar, Mir, Saqib, Fernandez Montecelo, Manuel A., Mukhopadhyay, Abhik, Oldfield, Thomas J., Patwardhan, Ardan, Sanz-García, Eduardo, Sen, Sanchayita, Slowley, Robert A., Wainwright, Michael E., Deshpande, Mandar S., Iudin, Andrii, Sahni, Gaurav, Salavert Torres, Jose, Hirshberg, Miriam, Mak, Lora, Nadzirin, Nurul, Armstrong, David R., Clark, Alice R., Smart, Oliver S., Korir, Paul K., Kleywegt, Gerard J.
Gepubliceerd in Nucleic Acids Res (2016)