Moving beyond genome sequencing into personalized genomic medicine: biological and computing challenges

Por Kristensen, David M
Publicado em 2011

Evolutionarily Conserved Orthologous Families in Phages Are Relatively Rare in Their Prokaryotic Hosts

Por Kristensen, David M., Cai, Xixu, Mushegian, Arcady
Publicado em 2011

Coupling Between Protein Level Selection and Codon Usage Optimization in the Evolution of Bacteria and Archaea

Por Ran, Wenqi, Kristensen, David M., Koonin, Eugene V.
Publicado em 2014

Evolutionary Conservation of Bacterial Essential Metabolic Genes across All Bacterial Culture Media

Por Ish-Am, Oren, Kristensen, David M., Ruppin, Eytan
Publicado no PLoS One (2015)

Systems biology of bacteriophage proteins and new dimensions of the virus world discovered through metagenomics

Por Kristensen, David M, Mushegian, Arcady R, Koonin, Eugene V
Publicado em 2011

ATGC database and ATGC-COGs: an updated resource for micro- and macro-evolutionary studies of prokaryotic genomes and protein family annotation

Por Kristensen, David M., Wolf, Yuri I., Koonin, Eugene V.
Publicado no Nucleic Acids Res (2017)

Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation

Por Grazziotin, Ana Laura, Koonin, Eugene V., Kristensen, David M.
Publicado no Nucleic Acids Res (2017)

Detection of Biochemical Pathways by Probabilistic Matching of Phyletic Vectors

Por Li, Hua, Kristensen, David M., Coleman, Michael K., Mushegian, Arcady
Publicado em 2009

A census of α-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea

Por Kristensen, David M., Saeed, Usman, Frishman, Dmitrij, Koonin, Eugene V.
Publicado no BMC Bioinformatics (2015)

Computational methods for Gene Orthology inference

Por Kristensen, David M., Wolf, Yuri I., Mushegian, Arcady R., Koonin, Eugene V.
Publicado em 2011

New dimensions of the virus world discovered through metagenomics

Por Kristensen, David M., Mushegian, Arcady R., Dolja, Valerian V., Koonin, Eugene V.
Publicado em 2009

Reconstruction of the evolution of microbial defense systems

Por Puigbò, Pere, Makarova, Kira S., Kristensen, David M., Wolf, Yuri I., Koonin, Eugene V.
Publicado no BMC Evol Biol (2017)

Inter-annual growth of Arctic charr (Salvelinus alpinus, L.) in relation to climate variation

Por Kristensen, David M, Jørgensen, Thomas R, Larsen, Rasmus K, Forchhammer, Mads C, Christoffersen, Kirsten S
Publicado em 2006

Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes

Por Puigbò, Pere, Lobkovsky, Alexander E, Kristensen, David M, Wolf, Yuri I, Koonin, Eugene V
Publicado em 2014

Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes

Por Kristensen, David M., Waller, Alison S., Yamada, Takuji, Bork, Peer, Mushegian, Arcady R., Koonin, Eugene V.
Publicado em 2013

No evidence of inhibition of horizontal gene transfer by CRISPR–Cas on evolutionary timescales

Por Gophna, Uri, Kristensen, David M, Wolf, Yuri I, Popa, Ovidiu, Drevet, Christine, Koonin, Eugene V
Publicado no ISME J (2015)

De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features

Por Ward, R. Matthew, Erdin, Serkan, Tran, Tuan A., Kristensen, David M., Lisewski, Andreas Martin, Lichtarge, Olivier
Publicado em 2008

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates

Por Matthew Ward, R., Venner, Eric, Daines, Bryce, Murray, Stephen, Erdin, Serkan, Kristensen, David M., Lichtarge, Olivier
Publicado em 2009

Evolutionary switches between two serine codon sets are driven by selection

Por Rogozin, Igor B., Belinky, Frida, Pavlenko, Vladimir, Shabalina, Svetlana A., Kristensen, David M., Koonin, Eugene V.
Publicado no Proc Natl Acad Sci U S A (2016)

Classification and quantification of bacteriophage taxa in human gut metagenomes

Por Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer
Publicado em 2014