mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code

Bằng Karpievitch, Yuliya V, Almeida, Jonas S
Được phát hành 2006

Normalization and missing value imputation for label-free LC-MS analysis

Bằng Karpievitch, Yuliya V, Dabney, Alan R, Smith, Richard D
Được phát hành 2012

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions

Bằng Srivastava, Akanksha, Karpievitch, Yuliya V., Eichten, Steven R., Borevitz, Justin O., Lister, Ryan
Xuất bản năm BMC Bioinformatics (2019)

An Introspective Comparison of Random Forest-Based Classifiers for the Analysis of Cluster-Correlated Data by Way of RF++

Bằng Karpievitch, Yuliya V., Hill, Elizabeth G., Leclerc, Anthony P., Dabney, Alan R., Almeida, Jonas S.
Được phát hành 2009

Metabolomics Data Normalization with EigenMS

Bằng Karpievitch, Yuliya V., Nikolic, Sonja B., Wilson, Richard, Sharman, James E., Edwards, Lindsay M.
Xuất bản năm PLoS One (2014)

Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects

Bằng Karpievitch, Yuliya V., Polpitiya, Ashoka D., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Được phát hành 2010

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

Bằng Stuart, Tim, Eichten, Steven R, Cahn, Jonathan, Karpievitch, Yuliya V, Borevitz, Justin O, Lister, Ryan
Xuất bản năm eLife (2016)

PrepMS: TOF MS Data Graphical Preprocessing Tool

Bằng Karpievitch, Yuliya V., Hill, Elizabeth G., Smolka, Adam J., Morris, Jeffrey S., Coombes, Kevin R., Baggerly, Keith A., Almeida, Jonas S.
Được phát hành 2006

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

Bằng Karpievitch, Yuliya V., Taverner, Thomas, Adkins, Joshua N., Callister, Stephen J., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Được phát hành 2009

DanteR: an extensible R-based tool for quantitative analysis of -omics data

Bằng Taverner, Tom, Karpievitch, Yuliya V., Polpitiya, Ashoka D., Brown, Joseph N., Dabney, Alan R., Anderson, Gordon A., Smith, Richard D.
Được phát hành 2012

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

Bằng Narsai, Reena, Gouil, Quentin, Secco, David, Srivastava, Akanksha, Karpievitch, Yuliya V., Liew, Lim Chee, Lister, Ryan, Lewsey, Mathew G., Whelan, James
Xuất bản năm Genome Biol (2017)

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics

Bằng Stanley, Jeffrey R., Adkins, Joshua N., Slysz, Gordon W., Monroe, Matthew E., Purvine, Samuel O., Karpievitch, Yuliya V., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Được phát hành 2011

Label-Free Quantitative LC-MS Proteomics of Alzheimer’s Disease and Normally Aged Human Brains

Bằng Andreev, Victor P., Petyuk, Vladislav A., Brewer, Heather M., Karpievitch, Yuliya V., Xie, Fang, Clarke, Jennifer, Camp, David, Smith, Richard D., Lieberman, Andrew P., Albin, Roger L., Nawaz, Zafar, El Hokayem, Jimmy, Myers, Amanda J.
Được phát hành 2012

Aberrant cell migration contributes to defective airway epithelial repair in childhood wheeze

Bằng Iosifidis, Thomas, Sutanto, Erika N., Buckley, Alysia G., Coleman, Laura, Gill, Erin E., Lee, Amy H., Ling, Kak-Ming, Hillas, Jessica, Looi, Kevin, Garratt, Luke W., Martinovich, Kelly M., Shaw, Nicole C., Montgomery, Samuel T., Kicic-Starcevich, Elizabeth, Karpievitch, Yuliya V., Le Souëf, Peter, Laing, Ingrid A., Vijayasekaran, Shyan, Lannigan, Francis J., Rigby, Paul J., Hancock, Robert E.W., Knight, Darryl A., Stick, Stephen M., Kicic., Anthony
Xuất bản năm JCI Insight (2020)