mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code

by Karpievitch, Yuliya V, Almeida, Jonas S
Published 2006

Normalization and missing value imputation for label-free LC-MS analysis

by Karpievitch, Yuliya V, Dabney, Alan R, Smith, Richard D
Published 2012

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions

by Srivastava, Akanksha, Karpievitch, Yuliya V., Eichten, Steven R., Borevitz, Justin O., Lister, Ryan
Published in BMC Bioinformatics (2019)

An Introspective Comparison of Random Forest-Based Classifiers for the Analysis of Cluster-Correlated Data by Way of RF++

by Karpievitch, Yuliya V., Hill, Elizabeth G., Leclerc, Anthony P., Dabney, Alan R., Almeida, Jonas S.
Published 2009

Metabolomics Data Normalization with EigenMS

by Karpievitch, Yuliya V., Nikolic, Sonja B., Wilson, Richard, Sharman, James E., Edwards, Lindsay M.
Published in PLoS One (2014)

Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects

by Karpievitch, Yuliya V., Polpitiya, Ashoka D., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Published 2010

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

by Stuart, Tim, Eichten, Steven R, Cahn, Jonathan, Karpievitch, Yuliya V, Borevitz, Justin O, Lister, Ryan
Published in eLife (2016)

PrepMS: TOF MS Data Graphical Preprocessing Tool

by Karpievitch, Yuliya V., Hill, Elizabeth G., Smolka, Adam J., Morris, Jeffrey S., Coombes, Kevin R., Baggerly, Keith A., Almeida, Jonas S.
Published 2006

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

by Karpievitch, Yuliya V., Taverner, Thomas, Adkins, Joshua N., Callister, Stephen J., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Published 2009

DanteR: an extensible R-based tool for quantitative analysis of -omics data

by Taverner, Tom, Karpievitch, Yuliya V., Polpitiya, Ashoka D., Brown, Joseph N., Dabney, Alan R., Anderson, Gordon A., Smith, Richard D.
Published 2012

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

by Narsai, Reena, Gouil, Quentin, Secco, David, Srivastava, Akanksha, Karpievitch, Yuliya V., Liew, Lim Chee, Lister, Ryan, Lewsey, Mathew G., Whelan, James
Published in Genome Biol (2017)

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics

by Stanley, Jeffrey R., Adkins, Joshua N., Slysz, Gordon W., Monroe, Matthew E., Purvine, Samuel O., Karpievitch, Yuliya V., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Published 2011

Label-Free Quantitative LC-MS Proteomics of Alzheimer’s Disease and Normally Aged Human Brains

by Andreev, Victor P., Petyuk, Vladislav A., Brewer, Heather M., Karpievitch, Yuliya V., Xie, Fang, Clarke, Jennifer, Camp, David, Smith, Richard D., Lieberman, Andrew P., Albin, Roger L., Nawaz, Zafar, El Hokayem, Jimmy, Myers, Amanda J.
Published 2012

Aberrant cell migration contributes to defective airway epithelial repair in childhood wheeze

by Iosifidis, Thomas, Sutanto, Erika N., Buckley, Alysia G., Coleman, Laura, Gill, Erin E., Lee, Amy H., Ling, Kak-Ming, Hillas, Jessica, Looi, Kevin, Garratt, Luke W., Martinovich, Kelly M., Shaw, Nicole C., Montgomery, Samuel T., Kicic-Starcevich, Elizabeth, Karpievitch, Yuliya V., Le Souëf, Peter, Laing, Ingrid A., Vijayasekaran, Shyan, Lannigan, Francis J., Rigby, Paul J., Hancock, Robert E.W., Knight, Darryl A., Stick, Stephen M., Kicic., Anthony
Published in JCI Insight (2020)