Properties of Fixed-Fixed Models and Alternatives in Presence-Absence Data Analysis

по Kallio, Aleksi
Опубликовано в: PLoS One (2016)

Randomization techniques for assessing the significance of gene periodicity results

по Kallio, Aleksi, Vuokko, Niko, Ojala, Markus, Haiminen, Niina, Mannila, Heikki
Опубликовано 2011

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud

по Niemenmaa, Matti, Kallio, Aleksi, Schumacher, André, Klemelä, Petri, Korpelainen, Eija, Heljanko, Keijo
Опубликовано 2012

BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences

по Dahlö, Martin, Haziza, Frédéric, Kallio, Aleksi, Korpelainen, Eija, Bongcam-Rudloff, Erik, Spjuth, Ola
Опубликовано в: Bioinform Biol Insights (2015)

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop

по Schumacher, André, Pireddu, Luca, Niemenmaa, Matti, Kallio, Aleksi, Korpelainen, Eija, Zanetti, Gianluigi, Heljanko, Keijo
Опубликовано 2014

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

по Elo, Laura L., Kallio, Aleksi, Laajala, Teemu D., Hawkins, R. David, Korpelainen, Eija, Aittokallio, Tero
Опубликовано 2012

POMO - Plotting Omics analysis results for Multiple Organisms

по Lin, Jake, Kreisberg, Richard, Kallio, Aleksi, Dudley, Aimée M, Nykter, Matti, Shmulevich, Ilya, May, Patrick, Autio, Reija
Опубликовано 2013

Recommendations on e-infrastructures for next-generation sequencing

по Spjuth, Ola, Bongcam-Rudloff, Erik, Dahlberg, Johan, Dahlö, Martin, Kallio, Aleksi, Pireddu, Luca, Vezzi, Francesco, Korpelainen, Eija
Опубликовано в: Gigascience (2016)

MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus

по Juhila, Juuso, Sipilä, Tessa, Icay, Katherine, Nicorici, Daniel, Ellonen, Pekka, Kallio, Aleksi, Korpelainen, Eija, Greco, Dario, Hovatta, Iiris
Опубликовано 2011

Multisubstituted pyrimidines effectively inhibit bacterial growth and biofilm formation of Staphylococcus aureus

по Provenzani, Riccardo, San-Martin-Galindo, Paola, Hassan, Ghada, Legehar, Ashenafi, Kallio, Aleksi, Xhaard, Henri, Fallarero, Adyary, Yli-Kauhaluoma, Jari
Опубликовано в: Sci Rep (2021)

Quantitative analysis of colony morphology in yeast

по Ruusuvuori, Pekka, Lin, Jake, Scott, Adrian C., Tan, Zhihao, Sorsa, Saija, Kallio, Aleksi, Nykter, Matti, Yli-Harja, Olli, Shmulevich, Ilya, Dudley, Aimée M.
Опубликовано 2014

Experiences with workflows for automating data-intensive bioinformatics

по Spjuth, Ola, Bongcam-Rudloff, Erik, Hernández, Guillermo Carrasco, Forer, Lukas, Giovacchini, Mario, Guimera, Roman Valls, Kallio, Aleksi, Korpelainen, Eija, Kańduła, Maciej M, Krachunov, Milko, Kreil, David P, Kulev, Ognyan, Łabaj, Paweł P., Lampa, Samuel, Pireddu, Luca, Schönherr, Sebastian, Siretskiy, Alexey, Vassilev, Dimitar
Опубликовано в: Biol Direct (2015)