MMR: a tool for read multi-mapper resolution

द्वारा Kahles, André, Behr, Jonas, Rätsch, Gunnar
में प्रकाशित Bioinformatics (2016)

Excap: Maximization of Haplotypic Diversity of Linked Markers

द्वारा Kahles, André, Sarqume, Fahad, Savolainen, Peter, Arvestad, Lars
प्रकाशित 2013

SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data

द्वारा Kahles, André, Ong, Cheng Soon, Zhong, Yi, Rätsch, Gunnar
में प्रकाशित Bioinformatics (2016)

MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples

द्वारा Behr, Jonas, Kahles, André, Zhong, Yi, Sreedharan, Vipin T., Drewe, Philipp, Rätsch, Gunnar
प्रकाशित 2013

Dynamic compression schemes for graph coloring

द्वारा Mustafa, Harun, Schilken, Ingo, Karasikov, Mikhail, Eickhoff, Carsten, Rätsch, Gunnar, Kahles, André
में प्रकाशित Bioinformatics (2019)

Sparse Binary Relation Representations for Genome Graph Annotation

द्वारा Karasikov, Mikhail, Mustafa, Harun, Joudaki, Amir, Javadzadeh-no, Sara, Rätsch, Gunnar, Kahles, André
में प्रकाशित J Comput Biol (2020)

Polypyrimidine Tract Binding Protein Homologs from Arabidopsis Are Key Regulators of Alternative Splicing with Implications in Fundamental Developmental Processes([W])

द्वारा Rühl, Christina, Stauffer, Eva, Kahles, André, Wagner, Gabriele, Drechsel, Gabriele, Rätsch, Gunnar, Wachter, Andreas
प्रकाशित 2012

INTEGRATIVE GENOME-WIDE ANALYSIS OF THE DETERMINANTS OF RNA SPLICING IN KIDNEY RENAL CLEAR CELL CARCINOMA

द्वारा LEHMANN, KJONG-VAN, KAHLES, ANDRÉ, KANDOTH, CYRIAC, LEE, WILLIAM, SCHULTZ, NIKOLAUS, STEGLE, OLIVER, RÄTSCH, GUNNAR
में प्रकाशित Pac Symp Biocomput (2015)

Accurate detection of differential RNA processing

द्वारा Drewe, Philipp, Stegle, Oliver, Hartmann, Lisa, Kahles, André, Bohnert, Regina, Wachter, Andreas, Borgwardt, Karsten, Rätsch, Gunnar
प्रकाशित 2013

Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome([C])([W])

द्वारा Drechsel, Gabriele, Kahles, André, Kesarwani, Anil K., Stauffer, Eva, Behr, Jonas, Drewe, Philipp, Rätsch, Gunnar, Wachter, Andreas
प्रकाशित 2013

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis

द्वारा Sreedharan, Vipin T., Schultheiss, Sebastian J., Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
प्रकाशित 2014

Oqtans: a multifunctional workbench for RNA-seq data analysis

द्वारा Sreedharan, Vipin T, Schultheiss, Sebastian J, Jean, Géraldine, Kahles, André, Bohnert, Regina, Drewe, Philipp, Mudrakarta, Pramod, Görnitz, Nico, Zeller, Georg, Rätsch, Gunnar
प्रकाशित 2014

Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data

द्वारा Schultheiss, Sebastian J, Jean, Géraldine, Behr, Jonas, Bohnert, Regina, Drewe, Philipp, Görnitz, Nico, Kahles, André, Mudrakarta, Pramod, Sreedharan, Vipin T, Zeller, Georg, Rätsch, Gunnar
प्रकाशित 2011

Systematic evaluation of spliced alignment programs for RNA-seq data

द्वारा Engström, Pär G, Steijger, Tamara, Sipos, Botond, Grant, Gregory R, Kahles, André, Rätsch, Gunnar, Goldman, Nick, Hubbard, Tim J, Harrow, Jennifer, Guigó, Roderic, Bertone, Paul
प्रकाशित 2013

Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis

द्वारा Hartmann, Lisa, Drewe-Boß, Philipp, Wießner, Theresa, Wagner, Gabriele, Geue, Sascha, Lee, Hsin-Chieh, Obermüller, Dominik M., Kahles, André, Behr, Jonas, Sinz, Fabian H., Rätsch, Gunnar, Wachter, Andreas
में प्रकाशित Plant Cell (2016)

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

द्वारा Dubin, Manu J, Zhang, Pei, Meng, Dazhe, Remigereau, Marie-Stanislas, Osborne, Edward J, Paolo Casale, Francesco, Drewe, Philipp, Kahles, André, Jean, Geraldine, Vilhjálmsson, Bjarni, Jagoda, Joanna, Irez, Selen, Voronin, Viktor, Song, Qiang, Long, Quan, Rätsch, Gunnar, Stegle, Oliver, Clark, Richard M, Nordborg, Magnus
में प्रकाशित eLife (2015)

Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits

द्वारा Imprialou, Martha, Kahles, André, Steffen, Joshua G., Osborne, Edward J., Gan, Xiangchao, Lempe, Janne, Bhomra, Amarjit, Belfield, Eric, Visscher, Anne, Greenhalgh, Robert, Harberd, Nicholas P, Goram, Richard, Hein, Jotun, Robert-Seilaniantz, Alexandre, Jones, Jonathan, Stegle, Oliver, Kover, Paula, Tsiantis, Miltos, Nordborg, Magnus, Rätsch, Gunnar, Clark, Richard M., Mott, Richard
में प्रकाशित Genetics (2017)

NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test

द्वारा Dylus, David, Pillonel, Trestan, Opota, Onya, Wüthrich, Daniel, Seth-Smith, Helena M. B., Egli, Adrian, Leo, Stefano, Lazarevic, Vladimir, Schrenzel, Jacques, Laurent, Sacha, Bertelli, Claire, Blanc, Dominique S., Neuenschwander, Stefan, Ramette, Alban, Falquet, Laurent, Imkamp, Frank, Keller, Peter M., Kahles, Andre, Oberhaensli, Simone, Barbié, Valérie, Dessimoz, Christophe, Greub, Gilbert, Lebrand, Aitana
में प्रकाशित Front Microbiol (2020)

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

द्वारा Gan, Xiangchao, Stegle, Oliver, Behr, Jonas, Steffen, Joshua G., Drewe, Philipp, Hildebrand, Katie L., Lyngsoe, Rune, Schultheiss, Sebastian J., Osborne, Edward J., Sreedharan, Vipin T., Kahles, André, Bohnert, Regina, Jean, Géraldine, Derwent, Paul, Kersey, Paul, Belfield, Eric J., Harberd, Nicholas P., Kemen, Eric, Toomajian, Christopher, Kover, Paula X., Clark, Richard M., Rátsch, Gunnar, Mott, Richard
में प्रकाशित Nature (2011)

Publisher Correction: Building an international consortium for tracking coronavirus health status

द्वारा Segal, Eran, Zhang, Feng, Lin, Xihong, King, Gary, Shalem, Ophir, Shilo, Smadar, Allen, William E., Alquaddoomi, Faisal, Altae-Tran, Han, Anders, Simon, Balicer, Ran, Bauman, Tal, Bonilla, Ximena, Booman, Gisel, Chan, Andrew T., Cohen, Ori, Coletti, Silvano, Davidson, Natalie, Dor, Yuval, Drew, David A., Elemento, Olivier, Evans, Georgina, Ewels, Phil, Gale, Joshua, Gavrieli, Amir, Geiger, Benjamin, Grad, Yonatan H., Greene, Casey S., Hajirasouliha, Iman, Jerala, Roman, Kahles, Andre, Kallioniemi, Olli, Keshet, Ayya, Kocarev, Ljupco, Landua, Gregory, Meir, Tomer, Muller, Aline, Nguyen, Long H., Oresic, Matej, Ovchinnikova, Svetlana, Peterson, Hedi, Prodanova, Jana, Rajagopal, Jay, Rätsch, Gunnar, Rossman, Hagai, Rung, Johan, Sboner, Andrea, Sigaras, Alexandros, Spector, Tim, Steinherz, Ron, Stevens, Irene, Vilo, Jaak, Wilmes, Paul
में प्रकाशित Nat Med (2020)