ccSVM: correcting Support Vector Machines for confounding factors in biological data classification

Por Li, Limin, Rakitsch, Barbara, Borgwardt, Karsten
Publicado em 2011

Accurate indel prediction using paired-end short reads

Por Grimm, Dominik, Hagmann, Jörg, Koenig, Daniel, Weigel, Detlef, Borgwardt, Karsten
Publicado em 2013

Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs

Por Kam-Thong, Tony, Pütz, Benno, Karbalai, Nazanin, Müller−Myhsok, Bertram, Borgwardt, Karsten
Publicado em 2011

Efficient network-guided multi-locus association mapping with graph cuts

Por Azencott, Chloé-Agathe, Grimm, Dominik, Sugiyama, Mahito, Kawahara, Yoshinobu, Borgwardt, Karsten M.
Publicado em 2013

AraPheno: a public database for Arabidopsis thaliana phenotypes

Por Seren, Ümit, Grimm, Dominik, Fitz, Joffrey, Weigel, Detlef, Nordborg, Magnus, Borgwardt, Karsten, Korte, Arthur
Publicado no Nucleic Acids Res (2017)

Efficient branch-and-bound techniques for two-locus association mapping

Por Klotzbücher, Karin, Kobayashi, Yasushi, Shervashidze, Nino, Stegle, Oliver, Müller-Myhsok, Bertram, Weigel, Detlef, Borgwardt, Karsten
Publicado em 2011

A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

Por Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin, Borgwardt, Karsten M.
Publicado em 2010

Accurate detection of differential RNA processing

Por Drewe, Philipp, Stegle, Oliver, Hartmann, Lisa, Kahles, André, Bohnert, Regina, Wachter, Andreas, Borgwardt, Karsten, Rätsch, Gunnar
Publicado em 2013

Genome-wide detection of intervals of genetic heterogeneity associated with complex traits

Por Llinares-López, Felipe, Grimm, Dominik G., Bodenham, Dean A., Gieraths, Udo, Sugiyama, Mahito, Rowan, Beth, Borgwardt, Karsten
Publicado no Bioinformatics (2015)

In silico phenotyping via co-training for improved phenotype prediction from genotype

Por Roqueiro, Damian, Witteveen, Menno J., Anttila, Verneri, Terwindt, Gisela M., van den Maagdenberg, Arn M.J.M., Borgwardt, Karsten
Publicado no Bioinformatics (2015)

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

Por Hagmann, Jörg, Becker, Claude, Müller, Jonas, Stegle, Oliver, Meyer, Rhonda C., Wang, George, Schneeberger, Korbinian, Fitz, Joffrey, Altmann, Thomas, Bergelson, Joy, Borgwardt, Karsten, Weigel, Detlef
Publicado no PLoS Genet (2015)

Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids

Por Seymour, Danelle K., Chae, Eunyoung, Grimm, Dominik G., Martín Pizarro, Carmen, Habring-Müller, Anette, Vasseur, François, Rakitsch, Barbara, Borgwardt, Karsten M., Koenig, Daniel, Weigel, Detlef
Publicado no Proc Natl Acad Sci U S A (2016)

easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies

Por Grimm, Dominik G., Roqueiro, Damian, Salomé, Patrice A., Kleeberger, Stefan, Greshake, Bastian, Zhu, Wangsheng, Liu, Chang, Lippert, Christoph, Stegle, Oliver, Schölkopf, Bernhard, Weigel, Detlef, Borgwardt, Karsten M.
Publicado no Plant Cell (2017)

The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity

Por Grimm, Dominik G., Azencott, Chloé‐Agathe, Aicheler, Fabian, Gieraths, Udo, MacArthur, Daniel G., Samocha, Kaitlin E., Cooper, David N., Stenson, Peter D., Daly, Mark J., Smoller, Jordan W., Duncan, Laramie E., Borgwardt, Karsten M.
Publicado no Hum Mutat (2015)

EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units

Por Kam-Thong, Tony, Czamara, Darina, Tsuda, Koji, Borgwardt, Karsten, Lewis, Cathryn M, Erhardt-Lehmann, Angelika, Hemmer, Bernhard, Rieckmann, Peter, Daake, Markus, Weber, Frank, Wolf, Christiane, Ziegler, Andreas, Pütz, Benno, Holsboer, Florian, Schölkopf, Bernhard, Müller-Myhsok, Bertram
Publicado em 2011

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis([C])([W])

Por Windram, Oliver, Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard, Cooke, Emma, Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily, Kiddle, Steven J., Rhodes, Johanna, Atwell, Susanna, Kliebenstein, Daniel J., Kim, Youn-sung, Stegle, Oliver, Borgwardt, Karsten, Zhang, Cunjin, Tabrett, Alex, Legaie, Roxane, Moore, Jonathan, Finkenstadt, Bärbel, Wild, David L., Mead, Andrew, Rand, David, Beynon, Jim, Ott, Sascha, Buchanan-Wollaston, Vicky, Denby, Katherine J.
Publicado em 2012