Using a Single Fluorescent Reporter Gene to Infer Half-Life of Extrinsic Noise and Other Parameters of Gene Expression

Por Komorowski, Michał, Finkenstädt, Bärbel, Rand, David
Publicado em 2010

A temporal switch model for estimating transcriptional activity in gene expression

Por Jenkins, Dafyd J., Finkenstädt, Bärbel, Rand, David A.
Publicado em 2013

Bayesian inference of biochemical kinetic parameters using the linear noise approximation

Por Komorowski, Michał, Finkenstädt, Bärbel, Harper, Claire V, Rand, David A
Publicado em 2009

Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response

Por Sidaway-Lee, Kate, Costa, Maria J, Rand, David A, Finkenstadt, Bärbel, Penfield, Steven
Publicado em 2014

A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number

Por Woodcock, Dan J., Vance, Keith W., Komorowski, Michał, Koentges, Georgy, Finkenstädt, Bärbel, Rand, David A.
Publicado em 2013

ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data

Por Minas, Giorgos, Momiji, Hiroshi, Jenkins, Dafyd J., Costa, Maria J., Rand, David A., Finkenstädt, Bärbel
Publicado no BMC Bioinformatics (2017)

A stochastic transcriptional switch model for single cell imaging data

Por Hey, Kirsty L., Momiji, Hiroshi, Featherstone, Karen, Davis, Julian R.E., White, Michael R.H., Rand, David A., Finkenstädt, Bärbel
Publicado no Biostatistics (2015)

Inference on periodicity of circadian time series

Por Costa, Maria J., Finkenstädt, Bärbel, Roche, Véronique, Lévi, Francis, Gould, Peter D., Foreman, Julia, Halliday, Karen, Hall, Anthony, Rand, David A.
Publicado em 2013

Reconstruction of transcriptional dynamics from gene reporter data using differential equations

Por Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, Andrew J., Rand, David A.
Publicado em 2008

Dynamic Analysis of Stochastic Transcription Cycles

Por Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, David A., Davis, Julian R. E., White, Michael R. H.
Publicado em 2011

Asymmetry between Activation and Deactivation during a Transcriptional Pulse

Por Dunham, Lee S.S., Momiji, Hiroshi, Harper, Claire V., Downton, Polly J., Hey, Kirsty, McNamara, Anne, Featherstone, Karen, Spiller, David G., Rand, David A., Finkenstädt, Bärbel, White, Michael R.H., Davis, Julian R.E.
Publicado no Cell Syst (2017)

Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures

Por Gould, Peter D, Ugarte, Nicolas, Domijan, Mirela, Costa, Maria, Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, Andrew J, Finkenstädt, Bärbel, Penfield, Steven, Rand, David A, Halliday, Karen J, Hall, Anthony J W
Publicado em 2013

Spatially coordinated dynamic gene transcription in living pituitary tissue

Por Featherstone, Karen, Hey, Kirsty, Momiji, Hiroshi, McNamara, Anne V, Patist, Amanda L, Woodburn, Joanna, Spiller, David G, Christian, Helen C, McNeilly, Alan S, Mullins, John J, Finkenstädt, Bärbel F, Rand, David A, White, Michael RH, Davis, Julian RE
Publicado no eLife (2016)

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis([C])([W])

Por Windram, Oliver, Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard, Cooke, Emma, Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily, Kiddle, Steven J., Rhodes, Johanna, Atwell, Susanna, Kliebenstein, Daniel J., Kim, Youn-sung, Stegle, Oliver, Borgwardt, Karsten, Zhang, Cunjin, Tabrett, Alex, Legaie, Roxane, Moore, Jonathan, Finkenstadt, Bärbel, Wild, David L., Mead, Andrew, Rand, David, Beynon, Jim, Ott, Sascha, Buchanan-Wollaston, Vicky, Denby, Katherine J.
Publicado em 2012

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis

Por Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R.M., Baxter, Laura, Subramaniam, Sunitha, Hickman, Richard, Florance, Hannah, Sambles, Christine, Salmon, Deborah L., Feil, Regina, Bowden, Laura, Hill, Claire, Baker, Neil R., Lunn, John E., Finkenstädt, Bärbel, Mead, Andrew, Buchanan-Wollaston, Vicky, Beynon, Jim, Rand, David A., Wild, David L., Denby, Katherine J., Ott, Sascha, Smirnoff, Nicholas, Mullineaux, Philip M.
Publicado no Plant Cell (2016)