JEvTrace: refinement and variations of the evolutionary trace in JAVA

Por Joachimiak, Marcin P, Cohen, Fred E
Publicado em 2002

JColorGrid: software for the visualization of biological measurements

Por Joachimiak, Marcin P, Weisman, Jennifer L, May, Barnaby CH
Publicado em 2006

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

Por Bozdech, Zbynek, Zhu, Jingchun, Joachimiak, Marcin P, Cohen, Fred E, Pulliam, Brian, DeRisi, Joseph L
Publicado em 2003

An SF1 affinity model to identify branch point sequences in human introns

Por Pastuszak, Alexander W., Joachimiak, Marcin P., Blanchette, Marco, Rio, Donald C., Brenner, Steven E., Frankel, Alan D.
Publicado em 2011

Mutual Information Analysis Reveals Coevolving Residues in Tat That Compensate for Two Distinct Functions in HIV-1 Gene Expression

Por Dey, Siddharth S., Xue, Yuhua, Joachimiak, Marcin P., Friedland, Gregory D., Burnett, John C., Zhou, Qiang, Arkin, Adam P., Schaffer, David V.
Publicado em 2012

Transcriptomic and proteomic analyses of Desulfovibrio vulgaris biofilms: Carbon and energy flow contribute to the distinct biofilm growth state

Por Clark, Melinda E, He, Zhili, Redding, Alyssa M, Joachimiak, Marcin P, Keasling, Jay D, Zhou, Jizhong Z, Arkin, Adam P, Mukhopadhyay, Aindrila, Fields, Matthew W
Publicado em 2012

Deletion of the Desulfovibrio vulgaris Carbon Monoxide Sensor Invokes Global Changes in Transcription

Por Rajeev, Lara, Hillesland, Kristina L., Zane, Grant M., Zhou, Aifen, Joachimiak, Marcin P., He, Zhili, Zhou, Jizhong, Arkin, Adam P., Wall, Judy D., Stahl, David A.
Publicado em 2012

Snapshot of iron response in <it>Shewanella oneidensis </it>by gene network reconstruction

Por Jacobsen Janet, Dehal Paramvir, Wu Liyou, Joachimiak Marcin, Xiong Wenlu, Luo Feng, Harris Daniel P, Yang Yunfeng, Yang Zamin, Palumbo Anthony V, Arkin Adam P, Zhou Jizhong
Publicado em 2009-03-01

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

Por Yang, Yunfeng, Harris, Daniel P, Luo, Feng, Xiong, Wenlu, Joachimiak, Marcin, Wu, Liyou, Dehal, Paramvir, Jacobsen, Janet, Yang, Zamin, Palumbo, Anthony V, Arkin, Adam P, Zhou, Jizhong
Publicado em 2009

Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation

Por Elias, Dwayne A., Mukhopadhyay, Aindrila, Joachimiak, Marcin P., Drury, Elliott C., Redding, Alyssa M., Yen, Huei-Che B., Fields, Matthew W., Hazen, Terry C., Arkin, Adam P., Keasling, Jay D., Wall, Judy D.
Publicado em 2009

MicrobesOnline: an integrated portal for comparative and functional genomics

Por Dehal, Paramvir S., Joachimiak, Marcin P., Price, Morgan N., Bates, John T., Baumohl, Jason K., Chivian, Dylan, Friedland, Greg D., Huang, Katherine H., Keller, Keith, Novichkov, Pavel S., Dubchak, Inna L., Alm, Eric J., Arkin, Adam P.
Publicado em 2010

Functional Characterization of Crp/Fnr-Type Global Transcriptional Regulators in Desulfovibrio vulgaris Hildenborough

Por Zhou, Aifen, Chen, Yunyu I., Zane, Grant M., He, Zhili, Hemme, Christopher L., Joachimiak, Marcin P., Baumohl, Jason K., He, Qiang, Fields, Matthew W., Arkin, Adam P., Wall, Judy D., Hazen, Terry C., Zhou, Jizhong
Publicado em 2012

Response of Desulfovibrio vulgaris to Alkaline Stress

Por Stolyar, Sergey, He, Qiang, Joachimiak, Marcin P., He, Zhili, Yang, Zamin Koo, Borglin, Sharon E., Joyner, Dominique C., Huang, Katherine, Alm, Eric, Hazen, Terry C., Zhou, Jizhong, Wall, Judy D., Arkin, Adam P., Stahl, David A.
Publicado em 2007

Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution

Por Zhou, Aifen, Baidoo, Edward, He, Zhili, Mukhopadhyay, Aindrila, Baumohl, Jason K, Benke, Peter, Joachimiak, Marcin P, Xie, Ming, Song, Rong, Arkin, Adam P, Hazen, Terry C, Keasling, Jay D, Wall, Judy D, Stahl, David A, Zhou, Jizhong
Publicado em 2013

Functional responses of methanogenic archaea to syntrophic growth

Por Walker, Christopher B, Redding-Johanson, Alyssa M, Baidoo, Edward E, Rajeev, Lara, He, Zhili, Hendrickson, Erik L, Joachimiak, Marcin P, Stolyar, Sergey, Arkin, Adam P, Leigh, John A, Zhou, Jizhong, Keasling, Jay D, Mukhopadhyay, Aindrila, Stahl, David A
Publicado em 2012

Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough

Por Mukhopadhyay, Aindrila, Redding, Alyssa M., Joachimiak, Marcin P., Arkin, Adam P., Borglin, Sharon E., Dehal, Paramvir S., Chakraborty, Romy, Geller, Jil T., Hazen, Terry C., He, Qiang, Joyner, Dominique C., Martin, Vincent J. J., Wall, Judy D., Yang, Zamin Koo, Zhou, Jizhong, Keasling, Jay D.
Publicado em 2007

Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation

Por He, Zhili, Zhou, Aifen, Baidoo, Edward, He, Qiang, Joachimiak, Marcin P., Benke, Peter, Phan, Richard, Mukhopadhyay, Aindrila, Hemme, Christopher L., Huang, Katherine, Alm, Eric J., Fields, Matthew W., Wall, Judy, Stahl, David, Hazen, Terry C., Keasling, Jay D., Arkin, Adam P., Zhou, Jizhong
Publicado em 2010

Towards a Rigorous Network of Protein-Protein Interactions of the Model Sulfate Reducer Desulfovibrio vulgaris Hildenborough

Por Chhabra, Swapnil R., Joachimiak, Marcin P., Petzold, Christopher J., Zane, Grant M., Price, Morgan N., Reveco, Sonia A., Fok, Veronica, Johanson, Alyssa R., Batth, Tanveer S., Singer, Mary, Chandonia, John-Marc, Joyner, Dominique, Hazen, Terry C., Arkin, Adam P., Wall, Judy D., Singh, Anup K., Keasling, Jay D.
Publicado em 2011

The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families

Por Yooseph, Shibu, Sutton, Granger, Rusch, Douglas B, Halpern, Aaron L, Williamson, Shannon J, Remington, Karin, Eisen, Jonathan A, Heidelberg, Karla B, Manning, Gerard, Li, Weizhong, Jaroszewski, Lukasz, Cieplak, Piotr, Miller, Christopher S, Li, Huiying, Mashiyama, Susan T, Joachimiak, Marcin P, van Belle, Christopher, Chandonia, John-Marc, Soergel, David A, Zhai, Yufeng, Natarajan, Kannan, Lee, Shaun, Raphael, Benjamin J, Bafna, Vineet, Friedman, Robert, Brenner, Steven E, Godzik, Adam, Eisenberg, David, Dixon, Jack E, Taylor, Susan S, Strausberg, Robert L, Frazier, Marvin, Venter, J. Craig
Publicado em 2007

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery

Por Zhang, Xingmin Aaron, Yates, Amy, Vasilevsky, Nicole, Gourdine, J. P., Callahan, Tiffany J., Carmody, Leigh C., Danis, Daniel, Joachimiak, Marcin P., Ravanmehr, Vida, Pfaff, Emily R., Champion, James, Robasky, Kimberly, Xu, Hao, Fecho, Karamarie, Walton, Nephi A., Zhu, Richard L., Ramsdill, Justin, Mungall, Christopher J., Köhler, Sebastian, Haendel, Melissa A., McDonald, Clement J., Vreeman, Daniel J., Peden, David B., Bennett, Tellen D., Feinstein, James A., Martin, Blake, Stefanski, Adrianne L., Hunter, Lawrence E., Chute, Christopher G., Robinson, Peter N.
Publicado no NPJ Digit Med (2019)