miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

Por Hendrix, David, Levine, Michael, Shi, Weiyang
Publicado em 2010

A DEEP LEARNING APPROACH FOR CANCER DETECTION AND RELEVANT GENE IDENTIFICATION

Por Danaee, Padideh, Ghaeini, Reza, Hendrix, David A.
Publicado no Pac Symp Biocomput (2016)

A simplified miRNA-based gene silencing method for Drosophila melanogaster

Por Haley, Benjamin, Hendrix, David, Trang, Vinh, Levine, Michael
Publicado em 2008

A distinct class of small RNAs arises from pre-miRNA–proximal regions in a simple chordate

Por Shi, Weiyang, Hendrix, David, Levine, Mike, Haley, Benjamin
Publicado em 2009

Shadow Enhancers as a Source of Evolutionary Novelty

Por Hong, Joung-Woo, Hendrix, David A., Levine, Michael S.
Publicado no Science (2008)

HopBase: a unified resource for Humulus genomics

Por Hill, Steven T., Sudarsanam, Ramcharan, Henning, John, Hendrix, David
Publicado no Database (Oxford) (2017)

How the Dorsal gradient works: Insights from postgenome technologies

Por Hong, Joung-Woo, Hendrix, David A., Papatsenko, Dmitri, Levine, Michael S.
Publicado em 2008

Promoter elements associated with RNA Pol II stalling in the Drosophila embryo

Por Hendrix, David A., Hong, Joung-Woo, Zeitlinger, Julia, Rokhsar, Daniel S., Levine, Michael S.
Publicado em 2008

Neural-specific elongation of 3′ UTRs during Drosophila development

Por Hilgers, Valérie, Perry, Michael W., Hendrix, David, Stark, Alexander, Levine, Michael, Haley, Benjamin
Publicado em 2011

The Polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo

Por Chopra, Vivek S., Hendrix, David A., Core, Leighton J., Tsui, Chiahao, Lis, John T., Levine, Michael
Publicado em 2011

Computational Analysis of Noncoding RNAs

Por Washietl, Stefan, Will, Sebastian, Hendrix, David A., Goff, Loyal A., Rinn, John L., Berger, Bonnie, Kellis, Manolis
Publicado em 2012

Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging

Por Kuintzle, Rachael C., Chow, Eileen S., Westby, Tara N., Gvakharia, Barbara O., Giebultowicz, Jadwiga M., Hendrix, David A
Publicado no Nat Commun (2017)

In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper Sox9b Expression

Por Garcia, Gloria R., Goodale, Britton C., Wiley, Michelle W., La Du, Jane K., Hendrix, David A., Tanguay, Robert L.
Publicado no Mol Pharmacol (2017)

The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

Por Grote, Phillip, Wittler, Lars, Währisch, Sandra, Hendrix, David, Beisaw, Arica, Macura, Karol, Bläss, Gaby, Kellis, Manolis, Werber, Martin, Herrmann, Bernhard G.
Publicado em 2013

Transcription Factor CTIP1/ BCL11A Regulates Epidermal Differentiation and Lipid Metabolism During Skin Development

Por Li, Shan, Teegarden, Amy, Bauer, Emily M., Choi, Jaewoo, Messaddeq, Nadia, Hendrix, David A., Ganguli-Indra, Gitali, Leid, Mark, Indra, Arup K.
Publicado no Sci Rep (2017)

MicroRNA and gene expression changes in unruptured human cerebral aneurysms

Por Bekelis, Kimon, Hamilton, Joanna, Teegarden, Amy, Tomlinson, Craig R., Kuintzle, Rachael, Simmons, Nathan, Singer, Robert J., Roberts, David W., Kellis, Manolis, Hendrix, David
Publicado no J Neurosurg (2016)

Long non-coding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer

Por Beaver, Laura M., Kuintzle, Rachael, Buchanan, Alex, Wiley, Michelle W., Glasser, Sarah T., Wong, Carmen P., Johnson, Gavin S., Chang, Jeff H., Löhr, Christiane V., Williams, David E., Dashwood, Roderick H., Hendrix, David A., Ho, Emily
Publicado no J Nutr Biochem (2017)

PRC2 is required to maintain expression of the maternal Gtl2-Rian-Mirg locus by preventing de novo DNA methylation in mouse embryonic stem cells

Por Das, Partha Pratim, Hendrix, David A., Apostolou, Effie, Buchner, Alice H., Canver, Matthew C., Beyaz, Semir, Ljuboja, Damir, Kuintzle, Rachael, Kim, Woojin, Karnik, Rahul, Shao, Zhen, Xie, Huafeng, Xu, Jian, De Los Angeles, Alejandro, Zhang, Yingying, Choe, Junho, Jun, Don Leong Jia, Shen, Xiaohua, Gregory, Richard I., Daley, George Q., Meissner, Alexander, Kellis, Manolis, Hochedlinger, Konrad, Kim, Jonghwan, Orkin, Stuart H.
Publicado no Cell Rep (2015)

The Genome of the Western Clawed Frog Xenopus tropicalis

Por Hellsten, Uffe, Harland, Richard M., Gilchrist, Michael J., Hendrix, David, Jurka, Jerzy, Kapitonov, Vladimir, Ovcharenko, Ivan, Putnam, Nicholas H., Shu, Shengqiang, Taher, Leila, Blitz, Ira L., Blumberg, Bruce, Dichmann, Darwin S., Dubchak, Inna, Amaya, Enrique, Detter, John C., Fletcher, Russell, Gerhard, Daniela S., Goodstein, David, Graves, Tina, Grigoriev, Igor V., Grimwood, Jane, Kawashima, Takeshi, Lindquist, Erika, Lucas, Susan M., Mead, Paul E., Mitros, Therese, Ogino, Hajime, Ohta, Yuko, Poliakov, Alexander V., Pollet, Nicolas, Robert, Jacques, Salamov, Asaf, Sater, Amy K., Schmutz, Jeremy, Terry, Astrid, Vize, Peter D., Warren, Wesley C., Wells, Dan, Wills, Andrea, Wilson, Richard K., Zimmerman, Lyle B., Zorn, Aaron M., Grainger, Robert, Grammer, Timothy, Khokha, Mustafa K., Richardson, Paul M., Rokhsar, Daniel S.
Publicado em 2010