Seven myths of how transcription factors read the cis-regulatory code

od Zeitlinger, Julia
Izdano u Curr Opin Syst Biol (2020)

RNA polymerase II pausing during development

od Gaertner, Bjoern, Zeitlinger, Julia
Izdano 2014

ChIP-nexus: a novel ChIP-exo protocol for improved detection of in vivo transcription factor binding footprints

od He, Qiye, Johnston, Jeff, Zeitlinger, Julia
Izdano u Nat Biotechnol (2015)

Reporter-ChIP-nexus reveals strong contribution of the Drosophila initiator sequence to RNA polymerase pausing

od Shao, Wanqing, Alcantara, Sergio G-M, Zeitlinger, Julia
Izdano u eLife (2019)

TATA and paused promoters active in differentiated tissues have distinct expression characteristics

od Ramalingam, Vivekanandan, Natarajan, Malini, Johnston, Jeff, Zeitlinger, Julia
Izdano u Mol Syst Biol (2021)

Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis

od Koenecke, Nina, Johnston, Jeff, Gaertner, Bjoern, Natarajan, Malini, Zeitlinger, Julia
Izdano u Genome Biol (2016)

Drosophila poised enhancers are generated during tissue patterning with the help of repression

od Koenecke, Nina, Johnston, Jeff, He, Qiye, Meier, Samuel, Zeitlinger, Julia
Izdano u Genome Res (2017)

Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing

od Miller, Danny E., Staber, Cynthia, Zeitlinger, Julia, Hawley, R. Scott
Izdano u G3 (Bethesda) (2018)

Promoter elements associated with RNA Pol II stalling in the Drosophila embryo

od Hendrix, David A., Hong, Joung-Woo, Zeitlinger, Julia, Rokhsar, Daniel S., Levine, Michael S.
Izdano 2008

A global change in RNA polymerase II pausing during the Drosophila midblastula transition

od Chen, Kai, Johnston, Jeff, Shao, Wanqing, Meier, Samuel, Staber, Cynthia, Zeitlinger, Julia
Izdano 2013

Molecular Evolution of the Yap/Yorkie Proto-Oncogene and Elucidation of Its Core Transcriptional Program

od Ikmi, Aissam, Gaertner, Bjoern, Seidel, Christopher, Srivastava, Mansi, Zeitlinger, Julia, Gibson, Matthew C.
Izdano 2014

Identification of transcription factor binding sites from ChIP-seq data at high resolution

od Bardet, Anaïs F., Steinmann, Jonas, Bafna, Sangeeta, Knoblich, Juergen A., Zeitlinger, Julia, Stark, Alexander
Izdano 2013

Whole-genome ChIP–chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

od Zeitlinger, Julia, Zinzen, Robert P., Stark, Alexander, Kellis, Manolis, Zhang, Hailan, Young, Richard A., Levine, Michael
Izdano 2007

Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation

od Sun, Yujia, Nien, Chung-Yi, Chen, Kai, Liu, Hsiao-Yun, Johnston, Jeff, Zeitlinger, Julia, Rushlow, Christine
Izdano u Genome Res (2015)

RNA Polymerase Stalling at Developmental Control Genes in the Drosophila Embryo

od Zeitlinger, Julia, Stark, Alexander, Kellis, Manolis, Hong, Joung-Woo, Nechaev, Sergei, Adelman, Karen, Levine, Michael, Young, Richard A.
Izdano 2007

TRF2, but not TBP, mediates the transcription of ribosomal protein genes

od Wang, Yuan-Liang, Duttke, Sascha H.C., Chen, Kai, Johnston, Jeff, Kassavetis, George A., Zeitlinger, Julia, Kadonaga, James T.
Izdano 2014

RNA polymerase is poised for activation across the genome

od Muse, Ginger W, Gilchrist, Daniel A, Nechaev, Sergei, Shah, Ruchir, Parker, Joel S, Grissom, Sherry F, Zeitlinger, Julia, Adelman, Karen
Izdano 2007

Poised RNA Polymerase II changes over developmental time and prepares genes for future expression

od Gaertner, Bjoern, Johnston, Jeff, Chen, Kai, Wallaschek, Nina, Paulson, Ariel, Garruss, Alexander S., Gaudenz, Karin, De Kumar, Bony, Krumlauf, Robb, Zeitlinger, Julia
Izdano 2012

Paused Pol II Coordinates Tissue Morphogenesis in the Drosophila Embryo

od Lagha, Mounia, Bothma, Jacques P., Esposito, Emilia, Ng, Samuel, Stefanik, Laura, Tsui, Chiahao, Johnston, Jeffrey, Chen, Kai, Gilmour, David S., Zeitlinger, Julia, Levine, Michael S.
Izdano u Cell (2013)

Capicua controls Toll/IL-1 signaling targets independently of RTK regulation

od Papagianni, Aikaterini, Forés, Marta, Shao, Wanqing, He, Shuonan, Koenecke, Nina, Andreu, María José, Samper, Núria, Paroush, Ze’ev, González-Crespo, Sergio, Zeitlinger, Julia, Jiménez, Gerardo
Izdano u Proc Natl Acad Sci U S A (2018)