ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

Por Wilkerson, Matthew D., Hayes, D. Neil
Publicado em 2010

The next steps in next-gen sequencing of cancer genomes

Por Hayes, D. Neil, Kim, William Y.
Publicado no J Clin Invest (2015)

Therapeutic insights from genomic studies of head and neck squamous cell carcinomas

Por Hammerman, Peter S., Hayes, D. Neil, Grandis, Jennifer R.
Publicado no Cancer Discov (2015)

HEDGEHOG-GLI signaling inhibition suppresses tumor growth in squamous lung cancer

Por Huang, Lingling, Walter, Vonn, Hayes, D. Neil, Onaitis, Mark
Publicado em 2014

Genetic Landscape of Human Papillomavirus–Associated Head and Neck Cancer and Comparison to Tobacco-Related Tumors

Por Hayes, D. Neil, Van Waes, Carter, Seiwert, Tanguy Y.
Publicado no J Clin Oncol (2015)

Statistical Significance for Hierarchical Clustering

Por Kimes, Patrick K., Liu, Yufeng, Hayes, D. Neil, Marron, J. S.
Publicado no Biometrics (2017)

Multiple Response Regression for Gaussian Mixture Models with Known Labels

Por Lee, Wonyul, Du, Ying, Sun, Wei, Hayes, D. Neil, Liu, Yufeng
Publicado em 2012

MVisAGe identifies concordant and discordant genomic alterations of driver genes in squamous tumors

Por Walter, Vonn, Du, Ying, Danilova, Ludmila, Hayward, Michele C., Hayes, D. Neil
Publicado no Cancer Res (2018)

ABRA: improved coding indel detection via assembly-based realignment

Por Mose, Lisle E., Wilkerson, Matthew D., Hayes, D. Neil, Perou, Charles M., Parker, Joel S.
Publicado em 2014

Association between differential gene expression and body mass index among endometrial cancers from The Cancer Genome Atlas Project

Por Roque, Dario R., Makowski, Liza, Chen, Ting-Huei, Rashid, Naim, Hayes, D. Neil, Bae-Jump, Victoria
Publicado no Gynecol Oncol (2016)

Lung Adenocarcinoma and Squamous Cell Carcinoma Gene Expression Subtypes Demonstrate Significant Differences in Tumor Immune Landscape

Por Faruki, Hawazin, Mayhew, Gregory M., Serody, Jonathan S., Hayes, D. Neil, Perou, Charles M., Lai-Goldman, Myla
Publicado no J Thorac Oncol (2017)

Cafeteria Diet-induced Obesity Causes Oxidative Damage in White Adipose

Por Johnson, Amy R., Wilkerson, Matthew D., Sampey, Brante P., Troester, Melissa A., Hayes, D. Neil, Makowski, Liza
Publicado no Biochem Biophys Res Commun (2016)

Phase I Trial of Nanoparticle Albumin-Bound Paclitaxel in Combination with Gemcitabine in Patients with Thoracic Malignancies

Por Stinchcombe, Thomas E., Socinski, Mark A., Lee, Carrie B., Hayes, D. Neil, Moore, Dominic T., Goldberg, Richard M., Dees, E. Claire
Publicado em 2008

RNA Oncoimmune Phenotyping of HPV-Positive p16-Positive Oropharyngeal Squamous Cell Carcinomas by Nodal Status

Por Stepp, Wesley H., Farquhar, Douglas, Sheth, Siddharth, Mazul, Angela, Mamdani, Mohammed, Hackman, Trevor G., Hayes, D. Neil, Zevallos, Jose P.
Publicado no JAMA Otolaryngol Head Neck Surg (2018)

Proteomic analysis of ubiquitin ligase KEAP1 reveals associated proteins that inhibit NRF2 ubiquitination

Por Hast, Bridgid E., Goldfarb, Dennis, Mulvaney, Kathleen M., Hast, Michael A., Siesser, Priscila F., Yan, Feng, Hayes, D. Neil, Major, Michael B.
Publicado em 2013

Autologous reconstitution of human cancer and immune system in vivo

Por Fu, Juan, Sen, Rupashree, Masica, David L., Karchin, Rachel, Pardoll, Drew, Walter, Vonn, Hayes, D. Neil, Chung, Christine H., Kim, Young J.
Publicado no Oncotarget (2016)

ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data

Por Cabanski, Christopher R, Cavin, Keary, Bizon, Chris, Wilkerson, Matthew D, Parker, Joel S, Wilhelmsen, Kirk C, Perou, Charles M, Marron, JS, Hayes, D Neil
Publicado em 2012

BlackOPs: increasing confidence in variant detection through mappability filtering

Por Cabanski, Christopher R., Wilkerson, Matthew D., Soloway, Matthew, Parker, Joel S., Liu, Jinze, Prins, Jan F., Marron, J. S., Perou, Charles M., Hayes, D. Neil
Publicado em 2013

Concomitant Radiotherapy and Chemotherapy for High-Risk Nonmelanoma Skin Carcinomas of the Head and Neck

Por Apisarnthanarax, Smith, Dhruva, Nirav, Ardeshirpour, Farhad, Tepper, Joel E., Shores, Carol G., Rosenman, Julian G., Shockley, William W., Hayward, Michele C., Hayes, D. Neil
Publicado em 2011

Cancer-derived mutations in KEAP1 impair NRF2 degradation but not ubiquitination

Por Hast, Bridgid E., Cloer, Erica W., Goldfarb, Dennis, Li, Heng, Siesser, Priscila F., Yan, Feng, Walter, Vonn, Zheng, Ning, Hayes, D. Neil, Major, Michael B.
Publicado em 2013