The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

by Villén, Judit, Gygi, Steven P
Published 2008

A solid phase extraction-based platform for rapid phosphoproteomic analysis

by Dephoure, Noah, Gygi, Steven P.
Published 2011

Hyperplexing: A Method for Higher-Order Multiplexed Quantitative Proteomics Provides a Map of the Dynamic Response to Rapamycin in Yeast

by Dephoure, Noah, Gygi, Steven P.
Published in Sci Signal (2012)

High-density chemical cross-linking for modeling protein interactions

by Mintseris, Julian, Gygi, Steven P.
Published in Proc Natl Acad Sci U S A (2020)

Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics

by Elias, Joshua E., Gygi, Steven P.
Published 2010

A comprehensive proteomic and phosphoproteomic analysis of yeast deletion mutants of 14-3-3 orthologs and associated effects of rapamycin

by Paulo, Joao A., Gygi, Steven P.
Published in Proteomics (2014)

Nicotine-induced protein expression profiling reveals mutually altered proteins across four human cell lines

by Paulo, Joao A., Gygi, Steven P.
Published in Proteomics (2016)

Isobaric tag-based protein profiling of a nicotine-treated alpha7 nicotinic receptor-null human haploid cell line

by Paulo, Joao A., Gygi, Steven P.
Published in Proteomics (2018)

mTMT: An Alternative, Nonisobaric, Tandem Mass Tag Allowing for Precursor-Based Quantification

by Paulo, Joao A., Gygi, Steven P.
Published in Anal Chem (2019)

Weighing in on Ubiquitin: The Expanding Role of Mass Spectrometry-based Proteomics

by Kirkpatrick, Donald S., Denison, Carilee, Gygi, Steven P.
Published 2005

The ubiquitin–proteasome system regulates membrane fusion of yeast vacuoles

by Kleijnen, Maurits F, Kirkpatrick, Donald S, Gygi, Steven P
Published 2007

Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis

by Villén, Judit, Beausoleil, Sean A., Gygi, Steven P.
Published 2008

Global analysis of protein expression and phosphorylation levels in nicotine-treated pancreatic stellate cells

by Paulo, Joao A., Gaun, Aleksandr, Gygi, Steven P.
Published in J Proteome Res (2015)

Filter-based Protein Digestion (FPD): A Detergent-free and Scaffold-based Strategy for TMT workflows

by Stepanova, Ekaterina, Gygi, Steven P., Paulo, Joao A.
Published in J Proteome Res (2018)

Isobaric tag-based protein profiling across eight human cell lines using high-Field Asymmetric Ion Mobility Spectrometry (FAIMS) and Real-Time database Searching (RTS)

by Liu, Xinyue, Gygi, Steven P., Paulo, Joao A.
Published in Proteomics (2020)

Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching

by Zhang, Tian, Gygi, Steven P., Paulo, Joao A.
Published in J Proteome Res (2020)

A Semiautomated Paramagnetic Bead-Based Platform for Isobaric Tag Sample Preparation

by Liu, Xinyue, Gygi, Steven P., Paulo, Joao A.
Published in J Am Soc Mass Spectrom (2021)

Role for perinuclear chromosome tethering in maintenance of genome stability

by Mekhail, Karim, Seebacher, Jan, Gygi, Steven P., Moazed, Danesh
Published 2008

Cdc2-like Kinase 2 is an Insulin Regulated Suppressor of Hepatic Gluconeogenesis

by Rodgers, Joseph T., Haas, Wilhelm, Gygi, Steven P., Puigserver., Pere
Published 2010

MS3 eliminates ratio distortion in isobaric labeling-based multiplexed quantitative proteomics

by Ting, Lily, Rad, Ramin, Gygi, Steven P., Haas, Wilhelm
Published 2011