The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

od Villén, Judit, Gygi, Steven P
Wydane 2008

A solid phase extraction-based platform for rapid phosphoproteomic analysis

od Dephoure, Noah, Gygi, Steven P.
Wydane 2011

Hyperplexing: A Method for Higher-Order Multiplexed Quantitative Proteomics Provides a Map of the Dynamic Response to Rapamycin in Yeast

od Dephoure, Noah, Gygi, Steven P.
Wydane w Sci Signal (2012)

High-density chemical cross-linking for modeling protein interactions

od Mintseris, Julian, Gygi, Steven P.
Wydane w Proc Natl Acad Sci U S A (2020)

Target-Decoy Search Strategy for Mass Spectrometry-Based Proteomics

od Elias, Joshua E., Gygi, Steven P.
Wydane 2010

A comprehensive proteomic and phosphoproteomic analysis of yeast deletion mutants of 14-3-3 orthologs and associated effects of rapamycin

od Paulo, Joao A., Gygi, Steven P.
Wydane w Proteomics (2014)

Nicotine-induced protein expression profiling reveals mutually altered proteins across four human cell lines

od Paulo, Joao A., Gygi, Steven P.
Wydane w Proteomics (2016)

Isobaric tag-based protein profiling of a nicotine-treated alpha7 nicotinic receptor-null human haploid cell line

od Paulo, Joao A., Gygi, Steven P.
Wydane w Proteomics (2018)

mTMT: An Alternative, Nonisobaric, Tandem Mass Tag Allowing for Precursor-Based Quantification

od Paulo, Joao A., Gygi, Steven P.
Wydane w Anal Chem (2019)

Weighing in on Ubiquitin: The Expanding Role of Mass Spectrometry-based Proteomics

od Kirkpatrick, Donald S., Denison, Carilee, Gygi, Steven P.
Wydane 2005

The ubiquitin–proteasome system regulates membrane fusion of yeast vacuoles

od Kleijnen, Maurits F, Kirkpatrick, Donald S, Gygi, Steven P
Wydane 2007

Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis

od Villén, Judit, Beausoleil, Sean A., Gygi, Steven P.
Wydane 2008

Global analysis of protein expression and phosphorylation levels in nicotine-treated pancreatic stellate cells

od Paulo, Joao A., Gaun, Aleksandr, Gygi, Steven P.
Wydane w J Proteome Res (2015)

Filter-based Protein Digestion (FPD): A Detergent-free and Scaffold-based Strategy for TMT workflows

od Stepanova, Ekaterina, Gygi, Steven P., Paulo, Joao A.
Wydane w J Proteome Res (2018)

Isobaric tag-based protein profiling across eight human cell lines using high-Field Asymmetric Ion Mobility Spectrometry (FAIMS) and Real-Time database Searching (RTS)

od Liu, Xinyue, Gygi, Steven P., Paulo, Joao A.
Wydane w Proteomics (2020)

Temporal Proteomic Profiling of SH-SY5Y Differentiation with Retinoic Acid Using FAIMS and Real-Time Searching

od Zhang, Tian, Gygi, Steven P., Paulo, Joao A.
Wydane w J Proteome Res (2020)

A Semiautomated Paramagnetic Bead-Based Platform for Isobaric Tag Sample Preparation

od Liu, Xinyue, Gygi, Steven P., Paulo, Joao A.
Wydane w J Am Soc Mass Spectrom (2021)

Role for perinuclear chromosome tethering in maintenance of genome stability

od Mekhail, Karim, Seebacher, Jan, Gygi, Steven P., Moazed, Danesh
Wydane 2008

Cdc2-like Kinase 2 is an Insulin Regulated Suppressor of Hepatic Gluconeogenesis

od Rodgers, Joseph T., Haas, Wilhelm, Gygi, Steven P., Puigserver., Pere
Wydane 2010

MS3 eliminates ratio distortion in isobaric labeling-based multiplexed quantitative proteomics

od Ting, Lily, Rad, Ramin, Gygi, Steven P., Haas, Wilhelm
Wydane 2011