GCOD - GeneChip Oncology Database

por Liu, Fenglong, White, Joseph A, Antonescu, Corina, Gusenleitner, Daniel, Quackenbush, John
Publicado em 2011

iBBiG: iterative binary bi-clustering of gene sets

por Gusenleitner, Daniel, Howe, Eleanor A., Bentink, Stefan, Quackenbush, John, Culhane, Aedín C.
Publicado em 2012

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface

por Schröder, Markus S., Gusenleitner, Daniel, Quackenbush, John, Culhane, Aedín C., Haibe-Kains, Benjamin
Publicado em 2013

Genomic Models of Short-Term Exposure Accurately Predict Long-Term Chemical Carcinogenicity and Identify Putative Mechanisms of Action

por Gusenleitner, Daniel, Auerbach, Scott S., Melia, Tisha, Gómez, Harold F., Sherr, David H., Monti, Stefano
Publicado em 2014

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways

por Shen, Ying, Rahman, Mumtahena, Piccolo, Stephen R., Gusenleitner, Daniel, El-Chaar, Nader N., Cheng, Luis, Monti, Stefano, Bild, Andrea H., Johnson, W. Evan
Publicado no Bioinformatics (2015)

Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients

por Subrahmanyam, Priyanka B., Dong, Zhiwan, Gusenleitner, Daniel, Giobbie-Hurder, Anita, Severgnini, Mariano, Zhou, Jun, Manos, Michael, Eastman, Lauren M., Maecker, Holden T., Hodi, F. Stephen
Publicado no J Immunother Cancer (2018)

An Aryl Hydrocarbon Receptor-Mediated Amplification Loop That Enforces Cell Migration in ER(−)/PR(−)/Her2(−) Human Breast Cancer Cells

por Novikov, Olga, Wang, Zhongyan, Stanford, Elizabeth A., Parks, Ashley J., Ramirez-Cardenas, Alejandra, Landesman, Esther, Laklouk, Israa, Sarita-Reyes, Carmen, Gusenleitner, Daniel, Li, Amy, Monti, Stefano, Manteiga, Sara, Lee, Kyongbum, Sherr, David H.
Publicado no Mol Pharmacol (2016)

Targetable subsets of non-Hodgkin lymphoma in Malawi define therapeutic opportunities

por Morgan, Elizabeth A., Sweeney, M. Patrick, Tomoka, Tamiwe, Kopp, Nadja, Gusenleitner, Daniel, Redd, Robert A., Carey, Christopher D., Masamba, Leo, Kamiza, Steve, Pinkus, Geraldine S., Neuberg, Donna S., Rodig, Scott J., Milner, Danny A., Weinstock, David M.
Publicado no Blood Adv (2016)

Topological analysis reveals a PD-L1-associated microenvironmental niche for Reed-Sternberg cells in Hodgkin lymphoma

por Carey, Christopher D., Gusenleitner, Daniel, Lipschitz, Mikel, Roemer, Margaretha G. M., Stack, Edward C., Gjini, Evisa, Hu, Xihao, Redd, Robert, Freeman, Gordon J., Neuberg, Donna, Hodi, F. Stephen, Liu, Xiaole Shirley, Shipp, Margaret A., Rodig, Scott J.
Publicado no Blood (2017)

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

por Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John
Publicado em 2012

Molecular Classification of MYC-Driven B-Cell Lymphomas by Targeted Gene Expression Profiling of Fixed Biopsy Specimens

por Carey, Christopher D., Gusenleitner, Daniel, Chapuy, Bjoern, Kovach, Alexandra E., Kluk, Michael J., Sun, Heather H., Crossland, Rachel E., Bacon, Chris M., Rand, Vikki, Cin, Paola Dal, Le, Long P., Neuberg, Donna, Sohani, Aliyah R., Shipp, Margaret A., Monti, Stefano, Rodig, Scott J.
Publicado no J Mol Diagn (2015)

Diffuse large B-cell lymphoma patient-derived xenograft models capture the molecular and biological heterogeneity of the disease

por Chapuy, Bjoern, Cheng, Hongwei, Watahiki, Akira, Ducar, Matthew D., Tan, Yuxiang, Chen, Linfeng, Roemer, Margaretha G. M., Ouyang, Jing, Christie, Amanda L., Zhang, Liye, Gusenleitner, Daniel, Abo, Ryan P., Farinha, Pedro, von Bonin, Frederike, Thorner, Aaron R., Sun, Heather H., Gascoyne, Randy D., Pinkus, Geraldine S., van Hummelen, Paul, Wulf, Gerald G., Aster, Jon C., Weinstock, David M., Monti, Stefano, Rodig, Scott J., Wang, Yuzhuo, Shipp, Margaret A.
Publicado no Blood (2016)

Cancer-germline antigen expression discriminates clinical outcome to CTLA-4 blockade

por Shukla, Sachet A., Bachireddy, Pavan, Schilling, Bastian, Galonska, Christina, Zhan, Qian, Bango, Clyde, Langer, Rupert, Lee, Patrick C., Gusenleitner, Daniel, Keskin, Derin B., Babadi, Mehrtash, Mohammad, Arman, Gnirke, Andreas, Clement, Kendell, Cartun, Zachary J., Van Allen, Eliezer M., Miao, Diana, Huang, Ying, Snyder, Alexandra, Merghoub, Taha, Wolchok, Jedd D., Garraway, Levi A., Meissner, Alexander, Weber, Jeffrey S., Hacohen, Nir, Neuberg, Donna, Potts, Patrick R., Murphy, George F., Lian, Christine G., Schadendorf, Dirk, Hodi, F. Stephen, Wu, Catherine J
Publicado no Cell (2018)

Targetable genetic features of primary testicular and primary central nervous system lymphomas

por Chapuy, Bjoern, Roemer, Margaretha G. M., Stewart, Chip, Tan, Yuxiang, Abo, Ryan P., Zhang, Liye, Dunford, Andrew J., Meredith, David M., Thorner, Aaron R., Jordanova, Ekaterina S., Liu, Gang, Feuerhake, Friedrich, Ducar, Matthew D., Illerhaus, Gerald, Gusenleitner, Daniel, Linden, Erica A., Sun, Heather H., Homer, Heather, Aono, Miyuki, Pinkus, Geraldine S., Ligon, Azra H., Ligon, Keith L., Ferry, Judith A., Freeman, Gordon J., van Hummelen, Paul, Golub, Todd R., Getz, Gad, Rodig, Scott J., de Jong, Daphne, Monti, Stefano, Shipp, Margaret A.
Publicado no Blood (2016)