GCOD - GeneChip Oncology Database

le Liu, Fenglong, White, Joseph A, Antonescu, Corina, Gusenleitner, Daniel, Quackenbush, John
Foilsithe 2011

iBBiG: iterative binary bi-clustering of gene sets

le Gusenleitner, Daniel, Howe, Eleanor A., Bentink, Stefan, Quackenbush, John, Culhane, Aedín C.
Foilsithe 2012

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface

le Schröder, Markus S., Gusenleitner, Daniel, Quackenbush, John, Culhane, Aedín C., Haibe-Kains, Benjamin
Foilsithe 2013

Genomic Models of Short-Term Exposure Accurately Predict Long-Term Chemical Carcinogenicity and Identify Putative Mechanisms of Action

le Gusenleitner, Daniel, Auerbach, Scott S., Melia, Tisha, Gómez, Harold F., Sherr, David H., Monti, Stefano
Foilsithe 2014

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways

le Shen, Ying, Rahman, Mumtahena, Piccolo, Stephen R., Gusenleitner, Daniel, El-Chaar, Nader N., Cheng, Luis, Monti, Stefano, Bild, Andrea H., Johnson, W. Evan
Foilsithe in Bioinformatics (2015)

Distinct predictive biomarker candidates for response to anti-CTLA-4 and anti-PD-1 immunotherapy in melanoma patients

le Subrahmanyam, Priyanka B., Dong, Zhiwan, Gusenleitner, Daniel, Giobbie-Hurder, Anita, Severgnini, Mariano, Zhou, Jun, Manos, Michael, Eastman, Lauren M., Maecker, Holden T., Hodi, F. Stephen
Foilsithe in J Immunother Cancer (2018)

An Aryl Hydrocarbon Receptor-Mediated Amplification Loop That Enforces Cell Migration in ER(−)/PR(−)/Her2(−) Human Breast Cancer Cells

le Novikov, Olga, Wang, Zhongyan, Stanford, Elizabeth A., Parks, Ashley J., Ramirez-Cardenas, Alejandra, Landesman, Esther, Laklouk, Israa, Sarita-Reyes, Carmen, Gusenleitner, Daniel, Li, Amy, Monti, Stefano, Manteiga, Sara, Lee, Kyongbum, Sherr, David H.
Foilsithe in Mol Pharmacol (2016)

Targetable subsets of non-Hodgkin lymphoma in Malawi define therapeutic opportunities

le Morgan, Elizabeth A., Sweeney, M. Patrick, Tomoka, Tamiwe, Kopp, Nadja, Gusenleitner, Daniel, Redd, Robert A., Carey, Christopher D., Masamba, Leo, Kamiza, Steve, Pinkus, Geraldine S., Neuberg, Donna S., Rodig, Scott J., Milner, Danny A., Weinstock, David M.
Foilsithe in Blood Adv (2016)

Topological analysis reveals a PD-L1-associated microenvironmental niche for Reed-Sternberg cells in Hodgkin lymphoma

le Carey, Christopher D., Gusenleitner, Daniel, Lipschitz, Mikel, Roemer, Margaretha G. M., Stack, Edward C., Gjini, Evisa, Hu, Xihao, Redd, Robert, Freeman, Gordon J., Neuberg, Donna, Hodi, F. Stephen, Liu, Xiaole Shirley, Shipp, Margaret A., Rodig, Scott J.
Foilsithe in Blood (2017)

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

le Culhane, Aedín C., Schröder, Markus S., Sultana, Razvan, Picard, Shaita C., Martinelli, Enzo N., Kelly, Caroline, Haibe-Kains, Benjamin, Kapushesky, Misha, St Pierre, Anne-Alyssa, Flahive, William, Picard, Kermshlise C., Gusenleitner, Daniel, Papenhausen, Gerald, O'Connor, Niall, Correll, Mick, Quackenbush, John
Foilsithe 2012

Molecular Classification of MYC-Driven B-Cell Lymphomas by Targeted Gene Expression Profiling of Fixed Biopsy Specimens

le Carey, Christopher D., Gusenleitner, Daniel, Chapuy, Bjoern, Kovach, Alexandra E., Kluk, Michael J., Sun, Heather H., Crossland, Rachel E., Bacon, Chris M., Rand, Vikki, Cin, Paola Dal, Le, Long P., Neuberg, Donna, Sohani, Aliyah R., Shipp, Margaret A., Monti, Stefano, Rodig, Scott J.
Foilsithe in J Mol Diagn (2015)

Diffuse large B-cell lymphoma patient-derived xenograft models capture the molecular and biological heterogeneity of the disease

le Chapuy, Bjoern, Cheng, Hongwei, Watahiki, Akira, Ducar, Matthew D., Tan, Yuxiang, Chen, Linfeng, Roemer, Margaretha G. M., Ouyang, Jing, Christie, Amanda L., Zhang, Liye, Gusenleitner, Daniel, Abo, Ryan P., Farinha, Pedro, von Bonin, Frederike, Thorner, Aaron R., Sun, Heather H., Gascoyne, Randy D., Pinkus, Geraldine S., van Hummelen, Paul, Wulf, Gerald G., Aster, Jon C., Weinstock, David M., Monti, Stefano, Rodig, Scott J., Wang, Yuzhuo, Shipp, Margaret A.
Foilsithe in Blood (2016)

Cancer-germline antigen expression discriminates clinical outcome to CTLA-4 blockade

le Shukla, Sachet A., Bachireddy, Pavan, Schilling, Bastian, Galonska, Christina, Zhan, Qian, Bango, Clyde, Langer, Rupert, Lee, Patrick C., Gusenleitner, Daniel, Keskin, Derin B., Babadi, Mehrtash, Mohammad, Arman, Gnirke, Andreas, Clement, Kendell, Cartun, Zachary J., Van Allen, Eliezer M., Miao, Diana, Huang, Ying, Snyder, Alexandra, Merghoub, Taha, Wolchok, Jedd D., Garraway, Levi A., Meissner, Alexander, Weber, Jeffrey S., Hacohen, Nir, Neuberg, Donna, Potts, Patrick R., Murphy, George F., Lian, Christine G., Schadendorf, Dirk, Hodi, F. Stephen, Wu, Catherine J
Foilsithe in Cell (2018)

Targetable genetic features of primary testicular and primary central nervous system lymphomas

le Chapuy, Bjoern, Roemer, Margaretha G. M., Stewart, Chip, Tan, Yuxiang, Abo, Ryan P., Zhang, Liye, Dunford, Andrew J., Meredith, David M., Thorner, Aaron R., Jordanova, Ekaterina S., Liu, Gang, Feuerhake, Friedrich, Ducar, Matthew D., Illerhaus, Gerald, Gusenleitner, Daniel, Linden, Erica A., Sun, Heather H., Homer, Heather, Aono, Miyuki, Pinkus, Geraldine S., Ligon, Azra H., Ligon, Keith L., Ferry, Judith A., Freeman, Gordon J., van Hummelen, Paul, Golub, Todd R., Getz, Gad, Rodig, Scott J., de Jong, Daphne, Monti, Stefano, Shipp, Margaret A.
Foilsithe in Blood (2016)