PTMphinder: an R package for PTM site localization and motif extraction from proteomic datasets

di Wozniak, Jacob M., Gonzalez, David J.
Pubblicato in PeerJ (2019)

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions

di Korandla, Deepank R, Wozniak, Jacob M, Campeau, Anaamika, Gonzalez, David J, Wright, Erik S
Pubblicato in Bioinformatics (2019)

Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr

di Lapek, John D., Lewinski, Mary K., Wozniak, Jacob M., Guatelli, John, Gonzalez, David J.
Pubblicato in Mol Cell Proteomics (2017)

Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis

di Perera, Varahenage R., Lapek, John D., Newton, Gerald L., Gonzalez, David J., Pogliano, Kit
Pubblicato in PLoS One (2018)

CLK1 reorganizes the splicing factor U1-70K for early spliceosomal protein assembly

di Aubol, Brandon E., Wozniak, Jacob M., Fattet, Laurent, Gonzalez, David J., Adams, Joseph A.
Pubblicato in Proc Natl Acad Sci U S A (2021)

N-Terminal ArgD Peptides from the Classical Staphylococcus aureus Agr System have cytotoxic and proinflammatory activities

di Gonzalez, David J., Corriden, Ross, Akong-Moore, Kathryn, Olson, Joshua, Dorrestein, Pieter C., Nizet, Victor
Pubblicato in Chem Biol (2014)

Exposure of Mycobacterium abscessus to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria

di Rojony, Rajoana, Danelishvili, Lia, Campeau, Anaamika, Wozniak, Jacob M., Gonzalez, David J., Bermudez, Luiz E.
Pubblicato in Microorganisms (2020)

Dissociation of DNA damage sensing by endoglycosidase HPSE

di Agelidis, Alex, Suryawanshi, Rahul K., Patil, Chandrashekhar D., Campeau, Anaamika, Gonzalez, David J., Shukla, Deepak
Pubblicato in iScience (2021)

Tamoxifen Augments the Innate Immune Function of Neutrophils Through Modulation of Intracellular Ceramide

di Corriden, Ross, Hollands, Andrew, Olson, Joshua, Derieux, Jaclyn, Lopez, Justine, Chang, John T., Gonzalez, David J., Nizet, Victor
Pubblicato in Nat Commun (2015)

Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules

di Kersten, Roland D., Ziemert, Nadine, Gonzalez, David J., Duggan, Brendan M., Nizet, Victor, Dorrestein, Pieter C., Moore, Bradley S.
Pubblicazione 2013

Quantitative analysis of Mycobacterium avium subsp. hominissuis proteome in response to antibiotics and during exposure to different environmental conditions

di Rojony, Rajoana, Martin, Matthew, Campeau, Anaamika, Wozniak, Jacob M., Gonzalez, David J., Jaiswal, Pankaj, Danelishvili, L., Bermudez, Luiz E.
Pubblicato in Clin Proteomics (2019)

Organ-level protein networks as a reference for the host effects of the microbiome

di Mills, Robert H., Wozniak, Jacob M., Vrbanac, Alison, Campeau, Anaamika, Chassaing, Benoit, Gewirtz, Andrew, Knight, Rob, Gonzalez, David J.
Pubblicato in Genome Res (2020)

Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry

di Gonzalez, David J., Haste, Nina M., Hollands, Andrew, Fleming, Tinya C., Hamby, Matthew, Pogliano, Kit, Nizet, Victor, Dorrestein, Pieter C.
Pubblicazione 2011

Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A

di Yamanaka, Kazuya, Reynolds, Kirk A., Kersten, Roland D., Ryan, Katherine S., Gonzalez, David J., Nizet, Victor, Dorrestein, Pieter C., Moore, Bradley S.
Pubblicazione 2014

Identification of a human skin commensal bacterium that selectively kills Cutibacterium acnes

di O’Neill, Alan M., Nakatsuji, Teruaki, Hayachi, Asumi, Williams, Michael R., Mills, Robert H., Gonzalez, David J., Gallo, Richard L.
Pubblicato in J Invest Dermatol (2020)

A Cdk4/6-dependent phosphorylation gradient regulates the early to late G1 phase transition

di Kaulich, Manuel, Link, Verena M., Lapek, John D., Lee, Yeon J., Glass, Christopher K., Gonzalez, David J., Dowdy, Steven F.
Pubblicato in Sci Rep (2021)

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

di Mills, Robert H., Vázquez-Baeza, Yoshiki, Zhu, Qiyun, Jiang, Lingjing, Gaffney, James, Humphrey, Greg, Smarr, Larry, Knight, Rob, Gonzalez, David J.
Pubblicato in mSystems (2019)

Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer

di Chandrashekar, Darshan Shimoga, Golonka, Rachel M., Yeoh, Beng San, Gonzalez, David J., Heikenwälder, Mathias, Gerwirtz, Andrew T., Varambally, Sooryanarayana, Vijay-Kumar, Matam
Pubblicato in PLoS One (2020)

The tumor suppressor kinase DAPK3 drives tumor-intrinsic immunity through the STING–IFN-β pathway

di Takahashi, Mariko, Lio, Chan-Wang J., Campeau, Anaamika, Steger, Martin, Ay, Ferhat, Mann, Matthias, Gonzalez, David J., Jain, Mohit, Sharma, Sonia
Pubblicato in Nat Immunol (2021)

Optimization of carbon and energy utilization through differential translational efficiency

di Al-Bassam, Mahmoud M., Kim, Ji-Nu, Zaramela, Livia S., Kellman, Benjamin P., Zuniga, Cristal, Wozniak, Jacob M., Gonzalez, David J., Zengler, Karsten
Pubblicato in Nat Commun (2018)