Molecular correlates of immune cytolytic subgroups in colorectal cancer by integrated genomics analysis

od Roufas, Constantinos, Georgakopoulos-Soares, Ilias, Zaravinos, Apostolos
Wydane w NAR Cancer (2021)

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments

od Georgakopoulos-Soares, Ilias, Jain, Naman, Gray, Jesse M, Hemberg, Martin
Wydane w Bioinformatics (2017)

EMT Factors and Metabolic Pathways in Cancer

od Georgakopoulos-Soares, Ilias, Chartoumpekis, Dionysios V., Kyriazopoulou, Venetsana, Zaravinos, Apostolos
Wydane w Front Oncol (2020)

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis

od Georgakopoulos-Soares, Ilias, Morganella, Sandro, Jain, Naman, Hemberg, Martin, Nik-Zainal, Serena
Wydane w Genome Res (2018)

Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences

od Georgakopoulos-Soares, Ilias, Mouratidis, Ioannis, Parada, Guillermo E, Matharu, Navneet, Hemberg, Martin, Ahituv, Nadav
Wydane w Nucleic Acids Res (2020)

Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts

od Georgakopoulos-Soares, Ilias, Koh, Gene, Momen, Sophie E., Jiricny, Josef, Hemberg, Martin, Nik-Zainal, Serena
Wydane w Nat Commun (2020)

MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development

od Parada, Guillermo E., Munita, Roberto, Georgakopoulos-Soares, Ilias, Fernandes, Hugo J. R., Kedlian, Veronika R., Metzakopian, Emmanouil, Andres, Maria Estela, Miska, Eric A., Hemberg, Martin
Wydane w Genome Biol (2021)

The Transcriptomic Response of the Murine Thyroid Gland to Iodide Overload and the Role of the Nrf2 Antioxidant System

od Chartoumpekis, Dionysios V., Ziros, Panos G., Georgakopoulos-Soares, Ilias, Smith, Adam A. T., Marques, Ana Claudia, Ibberson, Mark, A. Kopp, Peter, Habeos, Ioannis, Trougakos, Ioannis P., Khoo, Nicholas K. H., Sykiotis, Gerasimos P.
Wydane w Antioxidants (Basel) (2020)

Deletion of CTCF sites in the SHH locus alters enhancer–promoter interactions and leads to acheiropodia

od Ushiki, Aki, Zhang, Yichi, Xiong, Chenling, Zhao, Jingjing, Georgakopoulos-Soares, Ilias, Kane, Lauren, Jamieson, Kirsty, Bamshad, Michael J., Nickerson, Deborah A., Shen, Yin, Lettice, Laura A., Silveira-Lucas, Elizabeth Lemos, Petit, Florence, Ahituv, Nadav
Wydane w Nat Commun (2021)

A practical framework and online tool for mutational signature analyses show inter-tissue variation and driver dependencies

od Degasperi, Andrea, Amarante, Tauanne Dias, Czarnecki, Jan, Shooter, Scott, Zou, Xueqing, Glodzik, Dominik, Morganella, Sandro, Nanda, Arjun S., Badja, Cherif, Koh, Gene, Momen, Sophie E., Georgakopoulos-Soares, Ilias, Dias, João M. L., Young, Jamie, Memari, Yasin, Davies, Helen, Nik-Zainal, Serena
Wydane w Nat Cancer (2020)

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

od Petljak, Mia, Alexandrov, Ludmil B., Brammeld, Jonathan S., Price, Stacey, Wedge, David C., Grossmann, Sebastian, Dawson, Kevin J., Ju, Young Seok, Iorio, Francesco, Tubio, Jose M.C., Koh, Ching Chiek, Georgakopoulos-Soares, Ilias, Rodríguez–Martín, Bernardo, Otlu, Burçak, O’Meara, Sarah, Butler, Adam P., Menzies, Andrew, Bhosle, Shriram G., Raine, Keiran, Jones, David R., Teague, Jon W., Beal, Kathryn, Latimer, Calli, O’Neill, Laura, Zamora, Jorge, Anderson, Elizabeth, Patel, Nikita, Maddison, Mark, Ng, Bee Ling, Graham, Jennifer, Garnett, Mathew J., McDermott, Ultan, Nik-Zainal, Serena, Campbell, Peter J., Stratton, Michael R.
Wydane w Cell (2019)