Target enhanced 2D similarity search by using explicit biological activity annotations and profiles

Por Yu, Xiang, Geer, Lewis Y., Han, Lianyi, Bryant, Stephen H.
Publicado no J Cheminform (2015)

CDART: Protein Homology by Domain Architecture

Por Geer, Lewis Y., Domrachev, Michael, Lipman, David J., Bryant, Stephen H.
Publicado em 2002

Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes

Por Sridhara, Viswanadham, Marchler-Bauer, Aron, Bryant, Stephen H., Geer, Lewis Y.
Publicado em 2011

Analysis of intact proteins on a chromatographic time scale by electron transfer dissociation tandem mass spectrometry

Por Chi, An, Bai, Dina L., Geer, Lewis Y., Shabanowitz, Jeffrey, Hunt, Donald F.
Publicado em 2007

Modeling the Evolution of Protein Domain Architectures Using Maximum Parsimony

Por Fong, Jessica H., Geer, Lewis Y., Panchenko, Anna R., Bryant, Stephen H.
Publicado em 2006

Automated annotation of chemical names in the literature with tunable accuracy

Por Zhang, Jun D, Geer, Lewis Y, Bolton, Evan E, Bryant, Stephen H
Publicado em 2011

MMDB: 3D structure data in Entrez

Por Wang, Yanli, Addess, Kenneth J., Geer, Lewis, Madej, Thomas, Marchler-Bauer, Aron, Zimmerman, Diane, Bryant, Stephen H.
Publicado em 2000

Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge

Por Sridhara, Viswanadham, Bai, Dina L, Chi, An, Shabanowitz, Jeffrey, Hunt, Donald F, Bryant, Stephen H, Geer, Lewis Y
Publicado em 2012

CDD: a database of conserved domain alignments with links to domain three-dimensional structure

Por Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Thiessen, Paul A., Geer, Lewis Y., Bryant, Stephen H.
Publicado em 2002

The NCBI BioSystems database

Por Geer, Lewis Y., Marchler-Bauer, Aron, Geer, Renata C., Han, Lianyi, He, Jane, He, Siqian, Liu, Chunlei, Shi, Wenyao, Bryant, Stephen H.
Publicado em 2010

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

Por Chi, An, Huttenhower, Curtis, Geer, Lewis Y., Coon, Joshua J., Syka, John E. P., Bai, Dina L., Shabanowitz, Jeffrey, Burke, Daniel J., Troyanskaya, Olga G., Hunt, Donald F.
Publicado em 2007

Negative electron-transfer dissociation nLC-MS/MS facilitates the analysis of thousands of acidic peptides

Por McAlister, Graeme C., Russell, Jason D., Rumachik, Neil G., Hebert, Alexander S., Syka, John E. P., Geer, Lewis Y., Westphall, Michael S., Pagliarini, David J., Coon, Joshua J.
Publicado em 2012

MMDB: annotating protein sequences with Entrez's 3D-structure database

Por Wang, Yanli, Addess, Kenneth J., Chen, Jie, Geer, Lewis Y., He, Jane, He, Siqian, Lu, Shennan, Madej, Thomas, Marchler-Bauer, Aron, Thiessen, Paul A., Zhang, Naigong, Bryant, Stephen H.
Publicado em 2007

MMDB: 3D structures and macromolecular interactions

Por Madej, Thomas, Addess, Kenneth J., Fong, Jessica H., Geer, Lewis Y., Geer, Renata C., Lanczycki, Christopher J., Liu, Chunlei, Lu, Shennan, Marchler-Bauer, Aron, Panchenko, Anna R., Chen, Jie, Thiessen, Paul A., Wang, Yanli, Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2012

MMDB: Entrez’s 3D-structure database

Por Wang, Yanli, Anderson, John B., Chen, Jie, Geer, Lewis Y., He, Siqian, Hurwitz, David I., Liebert, Cynthia A., Madej, Thomas, Marchler, Gabriele H., Marchler-Bauer, Aron, Panchenko, Anna R., Shoemaker, Benjamin A., Song, James S., Thiessen, Paul A., Yamashita, Roxanne A., Bryant, Stephen H.
Publicado em 2002

CDD: conserved domains and protein three-dimensional structure

Por Marchler-Bauer, Aron, Zheng, Chanjuan, Chitsaz, Farideh, Derbyshire, Myra K., Geer, Lewis Y., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, Hurwitz, David I., Lanczycki, Christopher J., Lu, Fu, Lu, Shennan, Marchler, Gabriele H., Song, James S., Thanki, Narmada, Yamashita, Roxanne A., Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2013

CDD: NCBI's conserved domain database

Por Marchler-Bauer, Aron, Derbyshire, Myra K., Gonzales, Noreen R., Lu, Shennan, Chitsaz, Farideh, Geer, Lewis Y., Geer, Renata C., He, Jane, Gwadz, Marc, Hurwitz, David I., Lanczycki, Christopher J., Lu, Fu, Marchler, Gabriele H., Song, James S., Thanki, Narmada, Wang, Zhouxi, Yamashita, Roxanne A., Zhang, Dachuan, Zheng, Chanjuan, Bryant, Stephen H.
Publicado no Nucleic Acids Res (2014)

RefSeq: an update on prokaryotic genome annotation and curation

Por Haft, Daniel H, DiCuccio, Michael, Badretdin, Azat, Brover, Vyacheslav, Chetvernin, Vyacheslav, O’Neill, Kathleen, Li, Wenjun, Chitsaz, Farideh, Derbyshire, Myra K, Gonzales, Noreen R, Gwadz, Marc, Lu, Fu, Marchler, Gabriele H, Song, James S, Thanki, Narmada, Yamashita, Roxanne A, Zheng, Chanjuan, Thibaud-Nissen, Françoise, Geer, Lewis Y, Marchler-Bauer, Aron, Pruitt, Kim D
Publicado no Nucleic Acids Res (2018)

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

Por Marchler-Bauer, Aron, Bo, Yu, Han, Lianyi, He, Jane, Lanczycki, Christopher J., Lu, Shennan, Chitsaz, Farideh, Derbyshire, Myra K., Geer, Renata C., Gonzales, Noreen R., Gwadz, Marc, Hurwitz, David I., Lu, Fu, Marchler, Gabriele H., Song, James S., Thanki, Narmada, Wang, Zhouxi, Yamashita, Roxanne A., Zhang, Dachuan, Zheng, Chanjuan, Geer, Lewis Y., Bryant, Stephen H.
Publicado no Nucleic Acids Res (2017)

CDD: a Conserved Domain Database for protein classification

Por Marchler-Bauer, Aron, Anderson, John B., Cherukuri, Praveen F., DeWeese-Scott, Carol, Geer, Lewis Y., Gwadz, Marc, He, Siqian, Hurwitz, David I., Jackson, John D., Ke, Zhaoxi, Lanczycki, Christopher J., Liebert, Cynthia A., Liu, Chunlei, Lu, Fu, Marchler, Gabriele H., Mullokandov, Mikhail, Shoemaker, Benjamin A., Simonyan, Vahan, Song, James S., Thiessen, Paul A., Yamashita, Roxanne A., Yin, Jodie J., Zhang, Dachuan, Bryant, Stephen H.
Publicado em 2005