REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

Por CALLAHAN, BENJAMIN, PROCTOR, DIANA, RELMAN, DAVID, FUKUYAMA, JULIA, HOLMES, SUSAN
Publicado no Pac Symp Biocomput (2016)

COMPARISONS OF DISTANCE METHODS FOR COMBINING COVARIATES AND ABUNDANCES IN MICROBIOME STUDIES

Por FUKUYAMA, JULIA, MCMURDIE, PAUL J., DETHLEFSEN, LES, RELMAN, DAVID A., HOLMES, SUSAN
Publicado no Pac Symp Biocomput (2012)

Mass cytometry analytical approaches reveal cytokine-induced changes in natural killer cells

Por Vendrame, Elena, Fukuyama, Julia, Strauss-Albee, Dara M., Holmes, Susan, Blish, Catherine A.
Publicado no Cytometry B Clin Cytom (2017)

THROMBOSPONDIN-1 INHIBITS NITRIC OXIDE SIGNALING VIA CD36 BY INHIBITING MYRISTIC ACID UPTAKE

Por Isenberg, Jeff S., Jia, Yifeng, Fukuyama, Julia, Switzer, Christopher H., Wink, David A., Roberts, David D.
Publicado em 2007

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

Por Callahan, Ben J., Sankaran, Kris, Fukuyama, Julia A., McMurdie, Paul J., Holmes, Susan P.
Publicado no F1000Res (2016)

Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment

Por Fukuyama, Julia, Rumker, Laurie, Sankaran, Kris, Jeganathan, Pratheepa, Dethlefsen, Les, Relman, David A., Holmes, Susan P.
Publicado no PLoS Comput Biol (2017)

Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage

Por Yan, Miling, Pamp, Sünje J., Fukuyama, Julia, Hwang, Peter H., Cho, Do-Yeon, Holmes, Susan, Relman, David A.
Publicado em 2013

Enhanced natural killer-cell and T-cell responses to influenza A virus during pregnancy

Por Kay, Alexander W., Fukuyama, Julia, Aziz, Natali, Dekker, Cornelia L., Mackey, Sally, Swan, Gary E., Davis, Mark M., Holmes, Susan, Blish, Catherine A.
Publicado em 2014

Pregnancy Does Not Attenuate the Antibody or Plasmablast Response to Inactivated Influenza Vaccine

Por Kay, Alexander W., Bayless, Nicholas L., Fukuyama, Julia, Aziz, Natali, Dekker, Cornelia L., Mackey, Sally, Swan, Gary E., Davis, Mark M., Blish, Catherine A.
Publicado no J Infect Dis (2015)

A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow

Por Proctor, Diana M., Fukuyama, Julia A., Loomer, Peter M., Armitage, Gary C., Lee, Stacey A., Davis, Nicole M., Ryder, Mark I., Holmes, Susan P., Relman, David A.
Publicado no Nat Commun (2018)

Human NK cell repertoire diversity reflects immune experience and correlates with viral susceptibility

Por Strauss-Albee, Dara M., Fukuyama, Julia, Liang, Emily C., Yao, Yi, Jarrell, Justin A., Drake, Alison L., Kinuthia, John, Montgomery, Ruth R., John-Stewart, Grace, Holmes, Susan, Blish, Catherine A.
Publicado no Sci Transl Med (2015)