Emergent gene order in a model of modular polyketide synthases

Por Callahan, Benjamin, Thattai, Mukund, Shraiman, Boris I.
Publicado em 2009

In Nature, There Is Only Diversity

Por McLaren, Michael R., Callahan, Benjamin J.
Publicado no mBio (2018)

REPRODUCIBLE RESEARCH WORKFLOW IN R FOR THE ANALYSIS OF PERSONALIZED HUMAN MICROBIOME DATA

Por CALLAHAN, BENJAMIN, PROCTOR, DIANA, RELMAN, DAVID, FUKUYAMA, JULIA, HOLMES, SUSAN
Publicado no Pac Symp Biocomput (2016)

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

Por Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Publicado no ISME J (2017)

Heterozygote advantage as a natural consequence of adaptation in diploids

Por Sellis, Diamantis, Callahan, Benjamin J., Petrov, Dmitri A., Messer, Philipp W.
Publicado em 2011

Denoising PCR-amplified metagenome data

Por Rosen, Michael J, Callahan, Benjamin J, Fisher, Daniel S, Holmes, Susan P
Publicado em 2012

Correlated Evolution of Nearby Residues in Drosophilid Proteins

Por Callahan, Benjamin, Neher, Richard A., Bachtrog, Doris, Andolfatto, Peter, Shraiman, Boris I.
Publicado em 2011

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Por Davis, Nicole M., Proctor, Diana M., Holmes, Susan P., Relman, David A., Callahan, Benjamin J.
Publicado no Microbiome (2018)

DADA2: High resolution sample inference from Illumina amplicon data

Por Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Publicado no Nat Methods (2016)

Dosing Regimen of Enrofloxacin Impacts Intestinal Pharmacokinetics and the Fecal Microbiota in Steers

Por Ferguson, Kaitlyn M., Jacob, Megan E., Theriot, Casey M., Callahan, Benjamin J., Prange, Timo, Papich, Mark G., Foster, Derek M.
Publicado no Front Microbiol (2018)

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

Por Bik, Elisabeth M., Costello, Elizabeth K., Switzer, Alexandra D., Callahan, Benjamin J., Holmes, Susan P., Wells, Randall S., Carlin, Kevin P., Jensen, Eric D., Venn-Watson, Stephanie, Relman, David A.
Publicado no Nat Commun (2016)

Temporal and spatial variation of the human microbiota during pregnancy

Por DiGiulio, Daniel B., Callahan, Benjamin J., McMurdie, Paul J., Costello, Elizabeth K., Lyell, Deirdre J., Robaczewska, Anna, Sun, Christine L., Goltsman, Daniela S. A., Wong, Ronald J., Shaw, Gary, Stevenson, David K., Holmes, Susan P., Relman, David A.
Publicado no Proc Natl Acad Sci U S A (2015)

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

Por Callahan, Benjamin J., DiGiulio, Daniel B., Goltsman, Daniela S. Aliaga, Sun, Christine L., Costello, Elizabeth K., Jeganathan, Pratheepa, Biggio, Joseph R., Wong, Ronald J., Druzin, Maurice L., Shaw, Gary M., Stevenson, David K., Holmes, Susan P., Relman, David A.
Publicado no Proc Natl Acad Sci U S A (2017)

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

Por Ghaemi, Mohammad Sajjad, DiGiulio, Daniel B, Contrepois, Kévin, Callahan, Benjamin, Ngo, Thuy T M, Lee-McMullen, Brittany, Lehallier, Benoit, Robaczewska, Anna, Mcilwain, David, Rosenberg-Hasson, Yael, Wong, Ronald J, Quaintance, Cecele, Culos, Anthony, Stanley, Natalie, Tanada, Athena, Tsai, Amy, Gaudilliere, Dyani, Ganio, Edward, Han, Xiaoyuan, Ando, Kazuo, McNeil, Leslie, Tingle, Martha, Wise, Paul, Maric, Ivana, Sirota, Marina, Wyss-Coray, Tony, Winn, Virginia D, Druzin, Maurice L, Gibbs, Ronald, Darmstadt, Gary L, Lewis, David B, Partovi Nia, Vahid, Agard, Bruno, Tibshirani, Robert, Nolan, Garry, Snyder, Michael P, Relman, David A, Quake, Stephen R, Shaw, Gary M, Stevenson, David K, Angst, Martin S, Gaudilliere, Brice, Aghaeepour, Nima
Publicado no Bioinformatics (2019)